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Tex10 testis expressed 10 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298065, updated on 2-Nov-2024

Summary

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Official Symbol
Tex10provided by RGD
Official Full Name
testis expressed 10provided by RGD
Primary source
RGD:1312045
See related
EnsemblRapid:ENSRNOG00000008618 AllianceGenome:RGD:1312045
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in mitochondrion and nucleoplasm. Predicted to be part of MLL1 complex. Predicted to be active in nucleus. Orthologous to human TEX10 (testis expressed 10). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 83.9), Spleen (RPKM 74.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tex10 in Genome Data Viewer
Location:
5q22
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (67557770..67603904, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (62762230..62808373, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (64179247..64225844, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene endoplasmic reticulum protein 44 Neighboring gene inversin Neighboring gene uncharacterized LOC102551711 Neighboring gene uncharacterized LOC108350968 Neighboring gene Myb/SANT DNA binding domain containing 3 Neighboring gene transmembrane protein with EGF-like and two follistatin-like domains 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. Dou Y, et al. Cell, 2005 Jun 17. PMID 15960975
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
part_of MLL1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of MLL1 complex ISO
Inferred from Sequence Orthology
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
testis-expressed protein 10
Names
testis expressed gene 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106653.1 → NP_001100123.1  testis-expressed protein 10

    See identical proteins and their annotated locations for NP_001100123.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474056
    UniProtKB/TrEMBL
    A0A8I6AC27, A6KJF4, D4A401
    Related
    ENSRNOP00000011401.5, ENSRNOT00000011401.7
    Conserved Domains (1) summary
    pfam12333
    Location:132 → 235
    Ipi1_N; Rix1 complex component involved in 60S ribosome maturation

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    67557770..67603904 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039109450.2 → XP_038965378.1  testis-expressed protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AC27, A6KJF4, D4A401
    Conserved Domains (1) summary
    pfam12333
    Location:132 → 235
    Ipi1_N; Rix1 complex component involved in 60S ribosome maturation

  2. XM_006238034.5 → XP_006238096.1  testis-expressed protein 10 isoform X1

    See identical proteins and their annotated locations for XP_006238096.1

    UniProtKB/TrEMBL
    A0A8I6AC27, A6KJF4, D4A401
    Conserved Domains (1) summary
    pfam12333
    Location:132 → 235
    Ipi1_N; Rix1 complex component involved in 60S ribosome maturation
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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