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Wdr31 WD repeat domain 31 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298096, updated on 2-Nov-2024

Summary

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Official Symbol
Wdr31provided by RGD
Official Full Name
WD repeat domain 31provided by RGD
Primary source
RGD:1309367
See related
EnsemblRapid:ENSRNOG00000014869 AllianceGenome:RGD:1309367
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human WDR31 (WD repeat domain 31). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 161.1), Kidney (RPKM 42.7) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Wdr31 in Genome Data Viewer
Location:
5q24
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (80914338..80933022, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (75897074..75917461, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (78305526..78324318, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA splicing tri-snRNP complex factor 4 Neighboring gene ring finger protein 183 Neighboring gene uncharacterized LOC102547534 Neighboring gene B-box and SPRY domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
WD repeat-containing protein 31

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011976.2 → NP_001011976.2  WD repeat-containing protein 31

    See identical proteins and their annotated locations for NP_001011976.2

    Status: VALIDATED

    Source sequence(s)
    AI579135, BC079286
    UniProtKB/TrEMBL
    A6J7U7, D4ACM5
    Conserved Domains (2) summary
    cd00200
    Location:58 → 344
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:65 → 101
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    80914338..80933022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017593245.3 → XP_017448734.1  WD repeat-containing protein 31 isoform X2

    UniProtKB/TrEMBL
    A0A8I6A3G8, D4ACM5
    Conserved Domains (3) summary
    COG2319
    Location:53 → 342
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:57 → 343
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:64 → 100
    7WD40; WD40 repeat [structural motif]

  2. XM_063287339.1 → XP_063143409.1  WD repeat-containing protein 31 isoform X2

    UniProtKB/TrEMBL
    A0A8I6A3G8

  3. XM_017593244.3 → XP_017448733.1  WD repeat-containing protein 31 isoform X1

    UniProtKB/TrEMBL
    A6J7U7, D4ACM5
    Conserved Domains (2) summary
    cd00200
    Location:58 → 344
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:65 → 101
    7WD40; WD40 repeat [structural motif]

  4. XM_017593246.3 → XP_017448735.1  WD repeat-containing protein 31 isoform X4

  5. XM_039109468.2 → XP_038965396.1  WD repeat-containing protein 31 isoform X1

    UniProtKB/TrEMBL
    A6J7U7, D4ACM5
    Conserved Domains (2) summary
    cd00200
    Location:58 → 344
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:65 → 101
    7WD40; WD40 repeat [structural motif]

  6. XM_063287345.1 → XP_063143415.1  WD repeat-containing protein 31 isoform X4

  7. XM_063287343.1 → XP_063143413.1  WD repeat-containing protein 31 isoform X4

  8. XM_039109469.2 → XP_038965397.1  WD repeat-containing protein 31 isoform X1

    UniProtKB/TrEMBL
    A6J7U7, D4ACM5
    Conserved Domains (2) summary
    cd00200
    Location:58 → 344
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:65 → 101
    7WD40; WD40 repeat [structural motif]

  9. XM_063287346.1 → XP_063143416.1  WD repeat-containing protein 31 isoform X5

  10. XM_063287344.1 → XP_063143414.1  WD repeat-containing protein 31 isoform X4

  11. XM_063287347.1 → XP_063143417.1  WD repeat-containing protein 31 isoform X5

  12. XM_063287341.1 → XP_063143411.1  WD repeat-containing protein 31 isoform X2

    UniProtKB/TrEMBL
    A0A8I6A3G8

  13. XM_063287340.1 → XP_063143410.1  WD repeat-containing protein 31 isoform X2

    UniProtKB/TrEMBL
    A0A8I6A3G8
    Related
    ENSRNOP00000103390.1, ENSRNOT00000123972.1

  14. XM_063287342.1 → XP_063143412.1  WD repeat-containing protein 31 isoform X3

    UniProtKB/TrEMBL
    I6L9G3
    Related
    ENSRNOP00000074822.1, ENSRNOT00000082642.3

  15. XM_063287348.1 → XP_063143418.1  WD repeat-containing protein 31 isoform X6

  16. XM_063287349.1 → XP_063143419.1  WD repeat-containing protein 31 isoform X7

  17. XM_063287350.1 → XP_063143420.1  WD repeat-containing protein 31 isoform X7

RNA

  1. XR_005504385.2 RNA Sequence

  2. XR_010066352.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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