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Ttc22 tetratricopeptide repeat domain 22 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298300, updated on 17-Aug-2024

Summary

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Official Symbol
Ttc22provided by RGD
Official Full Name
tetratricopeptide repeat domain 22provided by RGD
Primary source
RGD:1561518
See related
EnsemblRapid:ENSRNOG00000007189 AllianceGenome:RGD:1561518
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561518
Summary
Orthologous to human TTC22 (tetratricopeptide repeat domain 22). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 25.2), Kidney (RPKM 20.7) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ttc22 in Genome Data Viewer
Location:
5q34
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (126630808..126651954)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (121401973..121423130)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (126217036..126243178)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene 24-dehydrocholesterol reductase Neighboring gene uncharacterized LOC120102943 Neighboring gene ciliary microtubule associated protein 2 Neighboring gene uncharacterized LOC120102944 Neighboring gene prolyl-tRNA synthetase 2, mitochondrial Neighboring gene tetratricopeptide repeat domain 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phosphorylation and degradation of tomosyn-2 de-represses insulin secretion. Bhatnagar S, et al. J Biol Chem, 2014 Sep 5. PMID 25002582, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
tetratricopeptide repeat protein 22

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106671.1 → NP_001100141.1  tetratricopeptide repeat protein 22

    See identical proteins and their annotated locations for NP_001100141.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474008
    UniProtKB/TrEMBL
    A6JYN4, D3ZRX3
    Related
    ENSRNOP00000009582.3, ENSRNOT00000009582.7
    Conserved Domains (1) summary
    sd00006
    Location:65 → 95
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    126630808..126651954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017593264.3 → XP_017448753.1  tetratricopeptide repeat protein 22 isoform X1

    UniProtKB/TrEMBL
    A6JYN4, D3ZRX3
    Conserved Domains (1) summary
    sd00006
    Location:65 → 95
    TPR; TPR repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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