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Crybg2 crystallin beta-gamma domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298543, updated on 2-Nov-2024

Summary

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Official Symbol
Crybg2provided by RGD
Official Full Name
crystallin beta-gamma domain containing 2provided by RGD
Primary source
RGD:1308621
See related
EnsemblRapid:ENSRNOG00000057957 AllianceGenome:RGD:1308621
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Aim1l
Summary
Orthologous to human CRYBG2 (crystallin beta-gamma domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Liver (RPKM 46.2), Lung (RPKM 9.4) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Crybg2 in Genome Data Viewer
Location:
5q36
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (151570154..151602164)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (146286406..146318417)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (152289492..152321539)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene lin-28 homolog A Neighboring gene uncharacterized LOC134487000 Neighboring gene zinc finger protein 683 Neighboring gene ferritin light chain 1-like Neighboring gene CD52 molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
absent in melanoma 1-like protein; beta/gamma crystallin domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001431159.1 → NP_001418088.1  absent in melanoma 1-like protein

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A0A0G2JVZ7

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    151570154..151602164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039111283.2 → XP_038967211.1  beta/gamma crystallin domain-containing protein 2 isoform X3

    Conserved Domains (2) summary
    PHA03247
    Location:586 → 948
    PHA03247; large tegument protein UL36; Provisional
    cl02528
    Location:1160 → 1198
    Crystall; Beta/Gamma crystallin

  2. XM_039111282.2 → XP_038967210.1  beta/gamma crystallin domain-containing protein 2 isoform X2

    Conserved Domains (2) summary
    PHA03247
    Location:586 → 948
    PHA03247; large tegument protein UL36; Provisional
    pfam00030
    Location:1342 → 1428
    Crystall; Beta/Gamma crystallin

  3. XM_008764189.4 → XP_008762411.1  beta/gamma crystallin domain-containing protein 2 isoform X1

    Related
    ENSRNOP00000069682.1, ENSRNOT00000089849.3
    Conserved Domains (5) summary
    pfam00030
    Location:1342 → 1428
    Crystall; Beta/Gamma crystallin
    pfam00652
    Location:1702 → 1829
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam15265
    Location:776 → 947
    FAM196; FAM196 family
    pfam15961
    Location:706 → 831
    DUF4764; Domain of unknown function (DUF4764)
    cl23784
    Location:1763 → 1832
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein Strain
Heading Accession and Version

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