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Slc7a15 solute carrier family 7 (cationic amino acid transporter, y+ system), member 15 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298873, updated on 2-Nov-2024

Summary

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Official Symbol
Slc7a15provided by RGD
Official Full Name
solute carrier family 7 (cationic amino acid transporter, y+ system), member 15provided by RGD
Primary source
RGD:1560726
See related
EnsemblRapid:ENSRNOG00000006119 AllianceGenome:RGD:1560726
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1560726
Summary
Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of protein-containing complex. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 7.5), Adrenal (RPKM 4.6) and 6 other tissues See more
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Genomic context

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See Slc7a15 in Genome Data Viewer
Location:
6q14
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (37123019..37135601, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (31403747..31415231, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (33728107..33739115, complement)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108351200 Neighboring gene ras homolog family member B Neighboring gene pumilio RNA-binding family member 2 Neighboring gene syndecan 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables L-amino acid transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in L-alpha-amino acid transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in amino acid transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
part_of protein-containing complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 7 (cationic amino acid transporter, y+ system), member 15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106714.1 → NP_001100184.1  solute carrier family 7 (cationic amino acid transporter, y+ system), member 15

    See identical proteins and their annotated locations for NP_001100184.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473947
    UniProtKB/TrEMBL
    A6HAM1, D3ZI89
    Related
    ENSRNOP00000032952.3, ENSRNOT00000039492.5
    Conserved Domains (1) summary
    TIGR00911
    Location:4 → 481
    2A0308; L-type amino acid transporter

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    37123019..37135601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008764578.3 → XP_008762800.1  solute carrier family 7 (cationic amino acid transporter, y+ system), member 15 isoform X1

    Conserved Domains (1) summary
    TIGR00911
    Location:4 → 265
    2A0308; L-type amino acid transporter
Nucleotide Protein Strain
Heading Accession and Version

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