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Slc66a3 solute carrier family 66 member 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298906, updated on 2-Nov-2024

Summary

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Official Symbol
Slc66a3provided by RGD
Official Full Name
solute carrier family 66 member 3provided by RGD
Primary source
RGD:1306818
See related
EnsemblRapid:ENSRNOG00000005126 AllianceGenome:RGD:1306818
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Pqlc3; RGD1306818
Summary
Predicted to be located in membrane. Orthologous to human SLC66A3 (solute carrier family 66 member 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 110.8), Spleen (RPKM 71.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Slc66a3 in Genome Data Viewer
Location:
6q16
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (45503541..45515293, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (39774801..39786554, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (42290678..42302451, complement)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene growth regulating estrogen receptor binding 1 Neighboring gene E2F transcription factor 6 Neighboring gene Rho-associated coiled-coil containing protein kinase 2 Neighboring gene uncharacterized LOC134479346 Neighboring gene ciliary microtubule inner protein 5 Neighboring gene potassium voltage-gated channel modifier subfamily F member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 66 member 3
Names
PQ loop repeat containing 3
PQ-loop repeat-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034952.1 → NP_001030124.1  solute carrier family 66 member 3 precursor

    See identical proteins and their annotated locations for NP_001030124.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081879, CB556892, CK477351
    UniProtKB/TrEMBL
    A6HAT8, G3V6N5
    Related
    ENSRNOP00000007071.6, ENSRNOT00000007071.8
    Conserved Domains (1) summary
    pfam04193
    Location:5 → 53
    PQ-loop; PQ loop repeat

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    45503541..45515293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039111949.1 → XP_038967877.1  solute carrier family 66 member 3 isoform X3

    UniProtKB/TrEMBL
    A0A8I5YCE9
    Conserved Domains (1) summary
    pfam04193
    Location:5 → 53
    PQ-loop; PQ loop repeat

  2. XM_008764587.4 → XP_008762809.1  solute carrier family 66 member 3 isoform X2

    UniProtKB/TrEMBL
    A0A8I6A368
    Related
    ENSRNOP00000085412.1, ENSRNOT00000101737.2
    Conserved Domains (1) summary
    pfam04193
    Location:5 → 53
    PQ-loop; PQ loop repeat

  3. XM_039111947.2 → XP_038967875.1  solute carrier family 66 member 3 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZ26
    Related
    ENSRNOP00000084445.1, ENSRNOT00000109304.2
    Conserved Domains (1) summary
    pfam04193
    Location:5 → 53
    PQ-loop; PQ loop repeat
Nucleotide Protein Strain
Heading Accession and Version

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