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Spmap2 sperm microtubule associated protein 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 299599, updated on 10-Jul-2024

Summary

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Official Symbol
Spmap2provided by RGD
Official Full Name
sperm microtubule associated protein 2provided by RGD
Primary source
RGD:1309240
See related
EnsemblRapid:ENSRNOG00000007960 AllianceGenome:RGD:1309240
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Theg
Summary
Predicted to be involved in spermatogenesis. Predicted to be located in nucleus. Orthologous to human THEG (theg spermatid protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 184.1) See more
Orthologs
human mouse all
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Genomic context

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See Spmap2 in Genome Data Viewer
Location:
7q11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (10777984..10788157)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (10127394..10137556)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (13013521..13023666)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene C2 calcium-dependent domain containing 4C Neighboring gene uncharacterized LOC134479817 Neighboring gene MIER family member 2 Neighboring gene phospholipid phosphatase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Insertional mutation of the murine kisimo locus caused a defect in spermatogenesis. Yanaka N, et al. J Biol Chem, 2000 May 19. PMID 10747865
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in spermatogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within spermatogenesis ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
sperm microtubule associated protein 2
Names
testicular haploid expressed gene protein
theg spermatid protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013102.2 → NP_001013120.1  sperm microtubule associated protein 2 isoform 1

    See identical proteins and their annotated locations for NP_001013120.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    A6K902
    Related
    ENSRNOP00000044536.2, ENSRNOT00000042792.6
    Conserved Domains (1) summary
    pfam14912
    Location:212 → 270
    THEG; Testicular haploid expressed repeat

  2. NM_001430265.1 → NP_001417194.1  sperm microtubule associated protein 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/Swiss-Prot
    Q5XHX8
    UniProtKB/TrEMBL
    A6K900

  3. NM_001430266.1 → NP_001417195.1  sperm microtubule associated protein 2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    A0A8I6AGA2, A6K901

  4. NM_001430267.1 → NP_001417196.1  sperm microtubule associated protein 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    A6K902

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    10777984..10788157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006240857.3 → XP_006240919.1  sperm microtubule associated protein 2 isoform X1

    Related
    ENSRNOP00000010549.4, ENSRNOT00000010549.9
    Conserved Domains (1) summary
    pfam14912
    Location:212 → 270
    THEG; Testicular haploid expressed repeat

  2. XM_063263162.1 → XP_063119232.1  sperm microtubule associated protein 2 isoform X3

  3. XM_006240858.5 → XP_006240920.1  sperm microtubule associated protein 2 isoform X2

    Related
    ENSRNOP00000091522.1, ENSRNOT00000104430.2
    Conserved Domains (1) summary
    pfam14912
    Location:188 → 246
    THEG; Testicular haploid expressed repeat
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5XHX8.2 GenPept UniProtKB/Swiss-Prot:Q5XHX8

Gene LinkOut

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