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C7h19orf25 similar to human chromosome 19 open reading frame 25 [ Rattus norvegicus (Norway rat) ]

Gene ID: 299612, updated on 2-Nov-2024

Summary

Official Symbol
C7h19orf25provided by RGD
Official Full Name
similar to human chromosome 19 open reading frame 25provided by RGD
Primary source
RGD:1359127
See related
EnsemblRapid:ENSRNOG00000079774 AllianceGenome:RGD:1359127
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1359127
Summary
Orthologous to human C19orf25 (chromosome 19 open reading frame 25). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 122.3), Kidney (RPKM 90.3) and 9 other tissues See more
Orthologs
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Genomic context

See C7h19orf25 in Genome Data Viewer
Location:
7q11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (10040929..10043057)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (9390255..9392383)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (12256387..12258515)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene receptor accessory protein 6 Neighboring gene uncharacterized LOC108351405 Neighboring gene proprotein convertase subtilisin/kexin type 4 Neighboring gene APC regulator of WNT signaling pathway 2 Neighboring gene ribosomal protein S15 Neighboring gene DAZ associated protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
UPF0449 protein C19orf25 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007657.1NP_001007658.1  UPF0449 protein C19orf25 homolog

    See identical proteins and their annotated locations for NP_001007658.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079167
    UniProtKB/Swiss-Prot
    Q6AY72
    Related
    ENSRNOP00000110080.1, ENSRNOT00000128648.1
    Conserved Domains (1) summary
    pfam15136
    Location:6103
    UPF0449; Uncharacterized protein family UPF0449

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    10040929..10043057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)