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Fam118a family with sequence similarity 118, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 300120, updated on 2-Nov-2024

Summary

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Official Symbol
Fam118aprovided by RGD
Official Full Name
family with sequence similarity 118, member Aprovided by RGD
Primary source
RGD:1560783
See related
EnsemblRapid:ENSRNOG00000013764 AllianceGenome:RGD:1560783
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1560783
Summary
Predicted to enable identical protein binding activity. Orthologous to human FAM118A (family with sequence similarity 118 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 92.1), Brain (RPKM 29.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fam118a in Genome Data Viewer
Location:
7q34
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (118032313..118058888)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (116152448..116178976)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (125937928..125964455)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479760 Neighboring gene uroplakin 3A Neighboring gene structural maintenance of chromosomes 1B Neighboring gene U6 spliceosomal RNA Neighboring gene RIB43A domain with coiled-coils 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
  2. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC189391

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
protein FAM118A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173336.1 → NP_001166807.1  protein FAM118A

    See identical proteins and their annotated locations for NP_001166807.1

    Status: PROVISIONAL

    Source sequence(s)
    BC169018
    UniProtKB/TrEMBL
    B5DFD4
    Related
    ENSRNOP00000107006.1, ENSRNOT00000129572.1
    Conserved Domains (1) summary
    pfam13289
    Location:142 → 247
    SIR2_2; SIR2-like domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    118032313..118058888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039078847.2 → XP_038934775.1  protein FAM118A isoform X3

    UniProtKB/TrEMBL
    F7FDN4
    Conserved Domains (1) summary
    pfam13289
    Location:149 → 254
    SIR2_2; SIR2-like domain

  2. XM_063263325.1 → XP_063119395.1  protein FAM118A isoform X2

  3. XM_063263328.1 → XP_063119398.1  protein FAM118A isoform X4

    UniProtKB/TrEMBL
    A0A0G2K3T5

  4. XM_063263324.1 → XP_063119394.1  protein FAM118A isoform X1

  5. XM_006242157.5 → XP_006242219.1  protein FAM118A isoform X3

    See identical proteins and their annotated locations for XP_006242219.1

    UniProtKB/TrEMBL
    F7FDN4
    Related
    ENSRNOP00000045006.4, ENSRNOT00000044274.6
    Conserved Domains (1) summary
    pfam13289
    Location:149 → 254
    SIR2_2; SIR2-like domain

  6. XM_063263323.1 → XP_063119393.1  protein FAM118A isoform X1

  7. XM_063263326.1 → XP_063119396.1  protein FAM118A isoform X2

  8. XM_063263327.1 → XP_063119397.1  protein FAM118A isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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