Spmip11 sperm microtubule inner protein 11 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Spmip11provided by RGD
Official Full Name: sperm microtubule inner protein 11provided by RGD
Primary source: RGD:1305928
See related: EnsemblRapid:ENSRNOG00000057264 AllianceGenome:RGD:1305928
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Tex49; RGD1305928
Summary: Predicted to be involved in flagellated sperm motility. Predicted to be located in sperm flagellum. Predicted to be active in axonemal A tubule inner sheath. Orthologous to human SPMIP11 (sperm microtubule inner protein 11). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Testes (RPKM 113.9), Heart (RPKM 15.0) and 4 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 7q36

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	7	NC_086025.1 (131599977..131621508)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	7	NC_051342.1 (129720950..129742485)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (140248852..140270340)

Chromosome 7 - NC_086025.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in flagellated sperm motility	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in axonemal A tubule inner sheath	IBA Inferred from Biological aspect of Ancestor more info
is_active_in axonemal A tubule inner sheath	ISO Inferred from Sequence Orthology more info
located_in sperm flagellum	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: sperm microtubule inner protein 11

Names: testis expressed 49; testis-expressed protein 49

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.