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Troap trophinin associated protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 300219, updated on 2-Nov-2024

Summary

Official Symbol
Troapprovided by RGD
Official Full Name
trophinin associated proteinprovided by RGD
Primary source
RGD:1306870
See related
EnsemblRapid:ENSRNOG00000060703 AllianceGenome:RGD:1306870
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human TROAP (trophinin associated protein). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 52.4), Spleen (RPKM 32.5) and 8 other tissues See more
Orthologs
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Genomic context

See Troap in Genome Data Viewer
Location:
7q36
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (132111892..132121296)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (130233534..130242369)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (140758576..140766423)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546594 Neighboring gene peripherin Neighboring gene complement C1q like 4 Neighboring gene DnaJ heat shock protein family (Hsp40) member C22

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271243.1NP_001258172.1  tastin

    See identical proteins and their annotated locations for NP_001258172.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    A6KCD9, D3ZLZ9
    Related
    ENSRNOP00000071862.1, ENSRNOT00000089448.3
    Conserved Domains (1) summary
    PHA03247
    Location:430638
    PHA03247; large tegument protein UL36; Provisional

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    132111892..132121296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006257348.5XP_006257410.1  tastin isoform X1

    UniProtKB/TrEMBL
    A0A8I6ARF8
    Related
    ENSRNOP00000097449.1, ENSRNOT00000112650.2
    Conserved Domains (1) summary
    PHA03247
    Location:200592
    PHA03247; large tegument protein UL36; Provisional
  2. XM_039078927.2XP_038934855.1  tastin isoform X2

    Conserved Domains (1) summary
    PHA03247
    Location:93392
    PHA03247; large tegument protein UL36; Provisional

RNA

  1. XR_005486593.2 RNA Sequence