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Ubl7 ubiquitin-like 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 300744, updated on 2-Nov-2024

Summary

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Official Symbol
Ubl7provided by RGD
Official Full Name
ubiquitin-like 7provided by RGD
Primary source
RGD:1303055
See related
EnsemblRapid:ENSRNOG00000007442 AllianceGenome:RGD:1303055
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Bmsc-UbP
Summary
Predicted to enable molecular adaptor activity and polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol. Orthologous to human UBL7 (ubiquitin like 7). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 109.7), Brain (RPKM 102.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ubl7 in Genome Data Viewer
Location:
8q24
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (67217151..67236224)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (58321279..58340353)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (62696557..62715694)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene AT-rich interaction domain 3B Neighboring gene uncharacterized LOC134480188 Neighboring gene uncharacterized LOC134480057 Neighboring gene semaphorin 7A (John Milton Hagen blood group) Neighboring gene uncharacterized LOC134480058 Neighboring gene uncharacterized LOC103693105

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Cloning and identification of a novel ubiquitin-like protein, BMSC-UbP, from human bone marrow stromal cells. Liu S, et al. Immunol Lett, 2003 Apr 3. PMID 12644319
  2. Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis. Na CH, et al. J Proteome Res, 2012 Sep 7. PMID 22871113, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC94284

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables molecular adaptor activity ISO
Inferred from Sequence Orthology
more info
  
enables polyubiquitin modification-dependent protein binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ubiquitin-like protein 7
Names
bone marrow stromal cell-derived ubiquitin-like protein
ubiquitin-like 7 (bone marrow stromal cell-derived)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004247.2 → NP_001004247.1  ubiquitin-like protein 7 isoform 1

    See identical proteins and their annotated locations for NP_001004247.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    A0A8I5ZWS3, Q6AY24
    Related
    ENSRNOP00000094185.2, ENSRNOT00000114949.2
    Conserved Domains (2) summary
    cd14326
    Location:347 → 376
    UBA_UBL7; UBA domain found in ubiquitin-like protein 7 (UBL7) and similar proteins
    cd01815
    Location:7 → 98
    Ubl_UBL7; ubiquitin-like (Ubl) domain found in ubiquitin-like protein 7 (UBL7) and similar proteins

  2. NM_001413519.1 → NP_001400448.1  ubiquitin-like protein 7 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    Q6AY24

  3. NM_001413520.1 → NP_001400449.1  ubiquitin-like protein 7 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    Q6AY24
    Related
    ENSRNOP00000083337.2, ENSRNOT00000117925.2

  4. NM_001429274.1 → NP_001416203.1  ubiquitin-like protein 7 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    Q6AY24

  5. NM_001429275.1 → NP_001416204.1  ubiquitin-like protein 7 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    Q6AY24

  6. NM_001429276.1 → NP_001416205.1  ubiquitin-like protein 7 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

  7. NM_001429277.1 → NP_001416206.1  ubiquitin-like protein 7 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

  8. NM_001429278.1 → NP_001416207.1  ubiquitin-like protein 7 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

  9. NM_001429279.1 → NP_001416208.1  ubiquitin-like protein 7 isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

  10. NM_001429280.1 → NP_001416209.1  ubiquitin-like protein 7 isoform 5

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

  11. NM_001429281.1 → NP_001416210.1  ubiquitin-like protein 7 isoform 6

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

  12. NM_001429282.1 → NP_001416211.1  ubiquitin-like protein 7 isoform 7

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

  13. NM_001429283.1 → NP_001416212.1  ubiquitin-like protein 7 isoform 7

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    67217151..67236224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039081089.2 → XP_038937017.1  ubiquitin-like protein 7 isoform X1

    Conserved Domains (2) summary
    cd14326
    Location:347 → 376
    UBA_UBL7; UBA domain found in ubiquitin-like protein 7 (UBL7) and similar proteins
    cd01815
    Location:7 → 98
    Ubl_UBL7; ubiquitin-like (Ubl) domain found in ubiquitin-like protein 7 (UBL7) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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