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Rec114 REC114 meiotic recombination protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 300751, updated on 2-Nov-2024

Summary

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Official Symbol
Rec114provided by RGD
Official Full Name
REC114 meiotic recombination proteinprovided by RGD
Primary source
RGD:1311874
See related
EnsemblRapid:ENSRNOG00000009332 AllianceGenome:RGD:1311874
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311874
Summary
Predicted to be involved in meiotic DNA double-strand break formation; oogenesis; and spermatogenesis. Predicted to be located in chromosome. Orthologous to human REC114 (REC114 meiotic recombination protein). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 395.6), Lung (RPKM 313.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Rec114 in Genome Data Viewer
Location:
8q24
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (67959181..68117296, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (59063352..59221439, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (63445644..63533645, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene inhibitory synaptic factor 1 Neighboring gene Cd276 molecule Neighboring gene neuroplastin Neighboring gene nucleophosmin-like Neighboring gene hyperpolarization activated cyclic nucleotide-gated potassium channel 4 Neighboring gene neogenin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in meiotic DNA double-strand break formation ISO
Inferred from Sequence Orthology
more info
  
involved_in oogenesis ISO
Inferred from Sequence Orthology
more info
  
involved_in spermatogenesis ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in chromosome ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
meiotic recombination protein REC114

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106825.2 → NP_001100295.1  meiotic recombination protein REC114 isoform 2

    See identical proteins and their annotated locations for NP_001100295.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    A6J513
    Conserved Domains (1) summary
    pfam15165
    Location:20 → 254
    REC114-like; Meiotic recombination protein REC114-like

  2. NM_001433278.1 → NP_001420207.1  meiotic recombination protein REC114 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    D3ZB61

  3. NM_001433279.1 → NP_001420208.1  meiotic recombination protein REC114 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    67959181..68117296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039081093.2 → XP_038937021.1  meiotic recombination protein REC114 isoform X5

    Conserved Domains (1) summary
    pfam15165
    Location:1 → 155
    REC114-like; Meiotic recombination protein REC114-like

  2. XM_006243160.5 → XP_006243222.1  meiotic recombination protein REC114 isoform X4

    Conserved Domains (1) summary
    pfam15165
    Location:20 → 223
    REC114-like; Meiotic recombination protein REC114-like

  3. XM_063265122.1 → XP_063121192.1  meiotic recombination protein REC114 isoform X3

  4. XM_006243158.5 → XP_006243220.1  meiotic recombination protein REC114 isoform X2

    Related
    ENSRNOP00000101309.1, ENSRNOT00000162667.1
    Conserved Domains (1) summary
    pfam15165
    Location:20 → 242
    REC114-like; Meiotic recombination protein REC114-like

  5. XM_006243157.5 → XP_006243219.1  meiotic recombination protein REC114 isoform X1

    Conserved Domains (1) summary
    pfam15165
    Location:20 → 271
    REC114-like; Meiotic recombination protein REC114-like

  6. XM_039081092.2 → XP_038937020.1  meiotic recombination protein REC114 isoform X4

    Conserved Domains (1) summary
    pfam15165
    Location:20 → 223
    REC114-like; Meiotic recombination protein REC114-like
Nucleotide Protein Strain
Heading Accession and Version

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