U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Atosa atos homolog A [ Rattus norvegicus (Norway rat) ]

Gene ID: 300836, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
Atosaprovided by RGD
Official Full Name
atos homolog Aprovided by RGD
Primary source
RGD:1310552
See related
EnsemblRapid:ENSRNOG00000058522 AllianceGenome:RGD:1310552
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam214a; RGD1310552
Summary
Orthologous to human FAM214A (family with sequence similarity 214 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Liver (RPKM 105.2), Adrenal (RPKM 101.2) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Atosa in Genome Data Viewer
Location:
8q24
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (84575360..84653103)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (75694828..75772565)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (81863619..81941548)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102549203 Neighboring gene one cut homeobox 1 Neighboring gene cAMP-regulated phosphoprotein 19 Neighboring gene myosin VA

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
atos homolog protein A
Names
family with sequence similarity 214, member A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106838.1 → NP_001100308.1  atos homolog protein A

    See identical proteins and their annotated locations for NP_001100308.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473954
    UniProtKB/TrEMBL
    A6I1A5
    Conserved Domains (2) summary
    pfam13889
    Location:1016 → 1073
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:877 → 934
    DUF4210; Domain of unknown function (DUF4210)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    84575360..84653103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039081143.2 → XP_038937071.1  atos homolog protein A isoform X3

    UniProtKB/TrEMBL
    A0A0G2JXE4
    Related
    ENSRNOP00000070239.2, ENSRNOT00000080608.3
    Conserved Domains (2) summary
    pfam13889
    Location:1021 → 1078
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:882 → 939
    DUF4210; Domain of unknown function (DUF4210)

  2. XM_039081145.2 → XP_038937073.1  atos homolog protein A isoform X3

    UniProtKB/TrEMBL
    A0A0G2JXE4
    Conserved Domains (2) summary
    pfam13889
    Location:1021 → 1078
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:882 → 939
    DUF4210; Domain of unknown function (DUF4210)

  3. XM_039081144.2 → XP_038937072.1  atos homolog protein A isoform X3

    UniProtKB/TrEMBL
    A0A0G2JXE4
    Conserved Domains (2) summary
    pfam13889
    Location:1021 → 1078
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:882 → 939
    DUF4210; Domain of unknown function (DUF4210)

  4. XM_063265179.1 → XP_063121249.1  atos homolog protein A isoform X4

    UniProtKB/TrEMBL
    A6I1A5

  5. XM_063265180.1 → XP_063121250.1  atos homolog protein A isoform X4

    UniProtKB/TrEMBL
    A6I1A5

  6. XM_039081141.2 → XP_038937069.1  atos homolog protein A isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZMC3
    Related
    ENSRNOP00000079209.1, ENSRNOT00000119004.2
    Conserved Domains (2) summary
    pfam13889
    Location:1028 → 1085
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:889 → 946
    DUF4210; Domain of unknown function (DUF4210)

  7. XM_039081142.2 → XP_038937070.1  atos homolog protein A isoform X2

    UniProtKB/TrEMBL
    A6I1A7
    Conserved Domains (2) summary
    pfam13889
    Location:1023 → 1080
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:884 → 941
    DUF4210; Domain of unknown function (DUF4210)

RNA

  1. XR_005487782.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools