U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

C8h3orf18 similar to human chromosome 3 open reading frame 18 [ Rattus norvegicus (Norway rat) ]

Gene ID: 300990, updated on 2-Nov-2024

Summary

Official Symbol
C8h3orf18provided by RGD
Official Full Name
similar to human chromosome 3 open reading frame 18provided by RGD
Primary source
RGD:1307461
See related
EnsemblRapid:ENSRNOG00000015718 AllianceGenome:RGD:1307461
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307461
Summary
Orthologous to human C3orf18 (chromosome 3 open reading frame 18). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 47.1), Brain (RPKM 17.0) and 5 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See C8h3orf18 in Genome Data Viewer
Location:
8q32
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (116891081..116901122)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (108012638..108022050)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (116094046..116104257)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene cytokine inducible SH2-containing protein Neighboring gene HemK methyltransferase family member 1 Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 2 Neighboring gene uncharacterized LOC134480230 Neighboring gene uncharacterized LOC120094259

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
uncharacterized protein C3orf18 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106854.3NP_001100324.1  uncharacterized protein C3orf18 homolog

    See identical proteins and their annotated locations for NP_001100324.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    A6I2W8, D4A9R5
    Related
    ENSRNOP00000021188.3, ENSRNOT00000021188.7
    Conserved Domains (1) summary
    TIGR04216
    Location:1384
    halo_surf_glyco; major cell surface glycoprotein
  2. NM_001433784.1NP_001420713.1  uncharacterized protein C3orf18 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    116891081..116901122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006243733.5XP_006243795.1  uncharacterized protein C3orf18 homolog isoform X2

    UniProtKB/TrEMBL
    A6I2W8, D4A9R5
    Conserved Domains (1) summary
    TIGR04216
    Location:1384
    halo_surf_glyco; major cell surface glycoprotein
  2. XM_063265239.1XP_063121309.1  uncharacterized protein C3orf18 homolog isoform X1

  3. XM_063265240.1XP_063121310.1  uncharacterized protein C3orf18 homolog isoform X1