U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ptchd4 patched domain containing 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 301271, updated on 2-Nov-2024

Summary

Official Symbol
Ptchd4provided by RGD
Official Full Name
patched domain containing 4provided by RGD
Primary source
RGD:1563020
See related
EnsemblRapid:ENSRNOG00000012708 AllianceGenome:RGD:1563020
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563020
Summary
Predicted to be active in membrane. Orthologous to human PTCHD4 (patched domain containing 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 31.5) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Ptchd4 in Genome Data Viewer
Location:
9q13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (25951395..26163296, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (18462934..18666272, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (21137150..21339398, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor F4 Neighboring gene transfer RNA threonine (anticodon AGU) 32 Neighboring gene opsin 5 Neighboring gene uncharacterized LOC134480348 Neighboring gene uncharacterized LOC120094642

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
patched domain-containing protein 4

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    25951395..26163296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008766914.4XP_008765136.3  patched domain-containing protein 4 isoform X2

    Related
    ENSRNOP00000016940.7, ENSRNOT00000016940.8
  2. XM_008766916.4XP_008765138.3  patched domain-containing protein 4 isoform X3

  3. XM_017596760.3XP_017452249.2  patched domain-containing protein 4 isoform X1

    Related
    ENSRNOP00000094067.2, ENSRNOT00000118927.2