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SAICODRAFT_72467 ribulose-phosphate 3-epimerase [ Saitoella complicata NRRL Y-17804 ]

Gene ID: 30187616, updated on 14-Dec-2023

Summary

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Gene symbol
SAICODRAFT_72467
Gene description
ribulose-phosphate 3-epimerase
Locus tag
SAICODRAFT_72467
Gene type
protein coding
RNA name
ribulose-phosphate 3-epimerase
RefSeq status
PROVISIONAL
Organism
Saitoella complicata NRRL Y-17804 (strain: NRRL Y-17804, type-material: culture from type material of Saitoella complicata)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Taphrinomycotina incertae sedis; Saitoella
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Genomic context

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See SAICODRAFT_72467 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
3

NW_017567010.1Genomic Context describing neighboring genes Neighboring gene Ribonuclease/ribotoxin Neighboring gene tryptophanyl-tRNA synthetase Neighboring gene P-loop containing nucleoside triphosphate hydrolase protein Neighboring gene hypothetical protein Neighboring gene DUF1941-domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017567010.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of biotechnologically important yeasts. Riley R, et al. Proc Natl Acad Sci U S A, 2016 Aug 30. PMID 27535936, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-ribulose-phosphate 3-epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribulose-phosphate 3-epimerase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_017567010.1 Reference assembly

    Range
    69959..70773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019170769.1 → XP_019022619.1  ribulose-phosphate 3-epimerase [Saitoella complicata NRRL Y-17804]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0E9NC07
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
ODQ51506.1

Gene LinkOut

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Molecular Biology Databases