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Cpped1 calcineurin-like phosphoesterase domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 302890, updated on 2-Nov-2024

Summary

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Official Symbol
Cpped1provided by RGD
Official Full Name
calcineurin-like phosphoesterase domain containing 1provided by RGD
Primary source
RGD:1306568
See related
AllianceGenome:RGD:1306568
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306568
Summary
Predicted to enable metal ion binding activity and myosin phosphatase activity. Predicted to be located in cytosol and plasma membrane. Orthologous to human CPPED1 (calcineurin like phosphoesterase domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 97.0), Liver (RPKM 85.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cpped1 in Genome Data Viewer
Location:
10q11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (4135601..4328039)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (3701522..3821050)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (3655038..3774887)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480743 Neighboring gene shisa family member 9 Neighboring gene uncharacterized LOC120095014 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene uncharacterized LOC120095243 Neighboring gene sorting nexin 29 Neighboring gene uncharacterized LOC134480744

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
serine/threonine-protein phosphatase CPPED1
Names
calcineurin-like phosphoesterase domain-containing protein 1
NP_001013985.1
XP_063124925.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013963.1 → NP_001013985.1  serine/threonine-protein phosphatase CPPED1

    See identical proteins and their annotated locations for NP_001013985.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081991
    UniProtKB/Swiss-Prot
    Q66H71
    UniProtKB/TrEMBL
    A6K4G7
    Conserved Domains (2) summary
    COG1409
    Location:33 → 268
    CpdA; 3',5'-cyclic AMP phosphodiesterase CpdA [Signal transduction mechanisms]
    cd07395
    Location:29 → 294
    MPP_CSTP1; Homo sapiens CSTP1 and related proteins, metallophosphatase domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    4135601..4328039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063268855.1 → XP_063124925.1  serine/threonine-protein phosphatase CPPED1 isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q66H71.1 GenPept UniProtKB/Swiss-Prot:Q66H71

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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