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Ranbp17 RAN binding protein 17 [ Rattus norvegicus (Norway rat) ]

Gene ID: 303029, updated on 2-Nov-2024

Summary

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Official Symbol
Ranbp17provided by RGD
Official Full Name
RAN binding protein 17provided by RGD
Primary source
RGD:1562576
See related
EnsemblRapid:ENSRNOG00000005042 AllianceGenome:RGD:1562576
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562576
Summary
Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Orthologous to human RANBP17 (RAN binding protein 17). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 35.9), Brain (RPKM 24.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ranbp17 in Genome Data Viewer
Location:
10q12
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (18304634..18607162, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (17800406..18102947, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (18139763..18445347, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546482 Neighboring gene nucleophosmin 1 Neighboring gene T-cell leukemia, homeobox 3 Neighboring gene spindle and kinetochore-associated protein 2 pseudogene Neighboring gene uncharacterized LOC108352198 Neighboring gene uncharacterized LOC120095244 Neighboring gene gamma-aminobutyric acid type A receptor subunit pi Neighboring gene potassium voltage-gated channel interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables nuclear export signal receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ran-binding protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106994.1 → NP_001100464.1  ran-binding protein 17

    See identical proteins and their annotated locations for NP_001100464.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473948
    UniProtKB/TrEMBL
    A6HDG6, D3ZYN8
    Related
    ENSRNOP00000108129.1, ENSRNOT00000141998.1
    Conserved Domains (1) summary
    pfam03810
    Location:30 → 95
    IBN_N; Importin-beta N-terminal domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    18304634..18607162 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063268960.1 → XP_063125030.1  ran-binding protein 17 isoform X4

  2. XM_063268959.1 → XP_063125029.1  ran-binding protein 17 isoform X3

  3. XM_008767582.4 → XP_008765804.1  ran-binding protein 17 isoform X1

    UniProtKB/TrEMBL
    A0A0G2KAF6
    Related
    ENSRNOP00000056640.3, ENSRNOT00000059895.4
    Conserved Domains (1) summary
    pfam03810
    Location:30 → 95
    IBN_N; Importin-beta N-terminal domain

  4. XM_063268961.1 → XP_063125031.1  ran-binding protein 17 isoform X5

  5. XM_017597247.3 → XP_017452736.1  ran-binding protein 17 isoform X2

  6. XM_039085897.2 → XP_038941825.1  ran-binding protein 17 isoform X6

RNA

  1. XR_010055172.1 RNA Sequence

  2. XR_010055171.1 RNA Sequence

  3. XR_010055174.1 RNA Sequence

  4. XR_010055173.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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