U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Chct1 CHD1 helical C-terminal domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 303395, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Chct1provided by RGD
Official Full Name
CHD1 helical C-terminal domain containing 1provided by RGD
Primary source
RGD:1310166
See related
EnsemblRapid:ENSRNOG00000003143 AllianceGenome:RGD:1310166
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310166; C10h17orf64
Summary
Orthologous to human CHCT1 (CHD1 helical C-terminal domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 149.3) See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Chct1 in Genome Data Viewer
Location:
10q26
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (70537206..70548972)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (70039510..70051556)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (72486023..72497052)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L37A, pseudogene 3 Neighboring gene ubiquitin specific peptidase 32 Neighboring gene DAB adaptor protein 1, pseudogene 1 Neighboring gene tetra-peptide repeat homeobox-like protein Neighboring gene large ribosomal subunit protein eL21-like Neighboring gene amyloid beta precursor protein binding protein 2 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1D

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
CHD1 helical C-terminal domain containing 1; CHD1 helical C-terminal domain containing protein 1
Names
uncharacterized protein C17orf64 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430193.1 → NP_001417122.1  CHD1 helical C-terminal domain containing 1 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    D4A8L7

  2. NM_001430194.1 → NP_001417123.1  CHD1 helical C-terminal domain containing 1 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

  3. NM_001430195.1 → NP_001417124.1  CHD1 helical C-terminal domain containing 1 isoform c

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    A0A8I6GCS6, A6HHN5

  4. NM_001430196.1 → NP_001417125.1  CHD1 helical C-terminal domain containing 1 isoform c

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    A0A8I6GCS6, A6HHN5

  5. NM_001430197.1 → NP_001417126.1  CHD1 helical C-terminal domain containing 1 isoform c

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    A0A8I6GCS6, A6HHN5

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    70537206..70548972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039087657.2 → XP_038943585.1  CHD1 helical C-terminal domain containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I6GCS6, A6HHN5

  2. XM_039087655.2 → XP_038943583.1  CHD1 helical C-terminal domain containing protein 1 isoform X3

    Conserved Domains (1) summary
    pfam13907
    Location:51 → 132
    DUF4208; Domain of unknown function (DUF4208)

  3. XM_039087656.2 → XP_038943584.1  CHD1 helical C-terminal domain containing protein 1 isoform X3

    Conserved Domains (1) summary
    pfam13907
    Location:51 → 132
    DUF4208; Domain of unknown function (DUF4208)

  4. XM_220804.10 → XP_220804.5  CHD1 helical C-terminal domain containing protein 1 isoform X1

    Related
    ENSRNOP00000004193.6, ENSRNOT00000004193.9
    Conserved Domains (1) summary
    pfam13907
    Location:50 → 132
    DUF4208; Domain of unknown function (DUF4208)

  5. XM_006247061.5 → XP_006247123.1  CHD1 helical C-terminal domain containing protein 1 isoform X2

    Conserved Domains (1) summary
    pfam13907
    Location:40 → 122
    DUF4208; Domain of unknown function (DUF4208)

  6. XM_039087658.2 → XP_038943586.1  CHD1 helical C-terminal domain containing protein 1 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools