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Zfp385c zinc finger protein 385C [ Rattus norvegicus (Norway rat) ]

Gene ID: 303537, updated on 2-Nov-2024

Summary

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Official Symbol
Zfp385cprovided by RGD
Official Full Name
zinc finger protein 385Cprovided by RGD
Primary source
RGD:1563442
See related
EnsemblRapid:ENSRNOG00000025370 AllianceGenome:RGD:1563442
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563442
Summary
Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be active in nucleus. Orthologous to human ZNF385C (zinc finger protein 385C). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 38.1), Heart (RPKM 27.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zfp385c in Genome Data Viewer
Location:
10q31
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (86062329..86118454, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (85562003..85618100, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (88541759..88597058, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene 2',3'-cyclic nucleotide 3' phosphodiesterase Neighboring gene DnaJ heat shock protein family (Hsp40) member C7 Neighboring gene NFKB inhibitor interacting Ras-like 2 Neighboring gene small nucleolar RNA SNORA44 Neighboring gene chromosome 10 C17orf113 homolog pseudogene Neighboring gene uncharacterized LOC120095293 Neighboring gene DEXH-box helicase 58 Neighboring gene lysine acetyltransferase 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 385C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430202.1 → NP_001417131.1  zinc finger protein 385C isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

  2. NM_001430203.1 → NP_001417132.1  zinc finger protein 385C isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

  3. NM_001430204.1 → NP_001417133.1  zinc finger protein 385C isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

  4. NM_001430205.1 → NP_001417134.1  zinc finger protein 385C isoform c

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

  5. NM_001430206.1 → NP_001417135.1  zinc finger protein 385C isoform d

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    86062329..86118454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063270150.1 → XP_063126220.1  zinc finger protein 385C isoform X3

    Related
    ENSRNOP00000107029.1, ENSRNOT00000135407.1

  2. XM_039087740.2 → XP_038943668.1  zinc finger protein 385C isoform X3

    UniProtKB/TrEMBL
    B1WC87
    Conserved Domains (4) summary
    smart00451
    Location:45 → 74
    ZnF_U1; U1-like zinc finger
    PHA03247
    Location:7 → 305
    PHA03247; large tegument protein UL36; Provisional
    sd00020
    Location:304 → 372
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:371 → 395
    zf-met; Zinc-finger of C2H2 type

  3. XM_039087739.2 → XP_038943667.1  zinc finger protein 385C isoform X2

    UniProtKB/TrEMBL
    B1WC87
    Conserved Domains (3) summary
    smart00451
    Location:45 → 74
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:303 → 371
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:370 → 394
    zf-met; Zinc-finger of C2H2 type

  4. XM_063270148.1 → XP_063126218.1  zinc finger protein 385C isoform X1

  5. XM_039087736.2 → XP_038943664.1  zinc finger protein 385C isoform X1

    UniProtKB/TrEMBL
    B1WC87
    Conserved Domains (4) summary
    smart00451
    Location:45 → 74
    ZnF_U1; U1-like zinc finger
    PHA03247
    Location:7 → 305
    PHA03247; large tegument protein UL36; Provisional
    sd00020
    Location:304 → 372
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:371 → 395
    zf-met; Zinc-finger of C2H2 type

  6. XM_063270151.1 → XP_063126221.1  zinc finger protein 385C isoform X4

    Related
    ENSRNOP00000031848.6, ENSRNOT00000032737.8

  7. XM_039087737.2 → XP_038943665.1  zinc finger protein 385C isoform X1

    UniProtKB/TrEMBL
    B1WC87
    Related
    ENSRNOP00000109629.1, ENSRNOT00000141671.1
    Conserved Domains (4) summary
    smart00451
    Location:45 → 74
    ZnF_U1; U1-like zinc finger
    PHA03247
    Location:7 → 305
    PHA03247; large tegument protein UL36; Provisional
    sd00020
    Location:304 → 372
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:371 → 395
    zf-met; Zinc-finger of C2H2 type

  8. XM_063270149.1 → XP_063126219.1  zinc finger protein 385C isoform X2

  9. XM_006247466.5 → XP_006247528.1  zinc finger protein 385C isoform X1

    Related
    ENSRNOP00000110435.1, ENSRNOT00000150987.1
    Conserved Domains (4) summary
    smart00451
    Location:45 → 74
    ZnF_U1; U1-like zinc finger
    PHA03247
    Location:7 → 305
    PHA03247; large tegument protein UL36; Provisional
    sd00020
    Location:304 → 372
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:371 → 395
    zf-met; Zinc-finger of C2H2 type
Nucleotide Protein Strain
Heading Accession and Version

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