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Faap100 FA core complex associated protein 100 [ Rattus norvegicus (Norway rat) ]

Gene ID: 303742, updated on 2-Nov-2024

Summary

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Official Symbol
Faap100provided by RGD
Official Full Name
FA core complex associated protein 100provided by RGD
Primary source
RGD:1306926
See related
EnsemblRapid:ENSRNOG00000036699 AllianceGenome:RGD:1306926
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306926
Summary
Predicted to be involved in interstrand cross-link repair. Predicted to be located in chromatin and cytosol. Predicted to be part of Fanconi anaemia nuclear complex. Predicted to be active in nucleoplasm. Orthologous to human FAAP100 (FA core complex associated protein 100). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 45.6), Adrenal (RPKM 34.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Faap100 in Genome Data Viewer
Location:
10q32.3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (106140820..106152500, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (105641677..105653809, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (109539381..109552434, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095311 Neighboring gene fascin actin-bundling protein 2, retinal Neighboring gene uncharacterized LOC134480918 Neighboring gene NPL4 homolog, ubiquitin recognition factor Neighboring gene tetraspanin 10 Neighboring gene phosphodiesterase 6G

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Fanconi anaemia nuclear complex IEA
Inferred from Electronic Annotation
more info
  
located_in chromatin ISO
Inferred from Sequence Orthology
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
Fanconi anemia core complex-associated protein 100
Names
Fanconi anemia core complex associated protein 100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    106140820..106152500 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039087819.2 → XP_038943747.1  Fanconi anemia core complex-associated protein 100 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZNL4, D3ZX03
    Related
    ENSRNOP00000079865.1, ENSRNOT00000103912.2
    Conserved Domains (1) summary
    pfam15146
    Location:482 → 913
    FANCAA; Fanconi anemia-associated

  2. XM_039087820.2 → XP_038943748.1  Fanconi anemia core complex-associated protein 100 isoform X2

    UniProtKB/TrEMBL
    D3ZX03
    Conserved Domains (1) summary
    pfam15146
    Location:302 → 733
    FANCAA; Fanconi anemia-associated

RNA

  1. XR_010055917.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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