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Pilrb2 paired immunoglobin like type 2 receptor beta 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 304382, updated on 2-Nov-2024

Summary

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Official Symbol
Pilrb2provided by RGD
Official Full Name
paired immunoglobin like type 2 receptor beta 2provided by RGD
Primary source
RGD:1561143
See related
EnsemblRapid:ENSRNOG00000085391 AllianceGenome:RGD:1561143
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561143
Summary
Predicted to enable MHC class I protein binding activity. Predicted to be located in cell periphery and membrane. Orthologous to human PILRA (paired immunoglobin like type 2 receptor alpha). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Spleen (RPKM 130.1), Lung (RPKM 25.7) and 3 other tissues See more
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Genomic context

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See Pilrb2 in Genome Data Viewer
Location:
12q12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (23438506..23445088, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (17773047..17779527, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (21866148..21923271, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene paired immunoglobin like type 2 receptor beta 2 like 8 Neighboring gene RAP1B, member of RAS oncogene family, pseudogene 2 Neighboring gene paired immunoglobin-like type 2 receptor alpha Neighboring gene zinc finger CW-type and PWWP domain containing 1-like 1 Neighboring gene paired immunoglobin-like type 2 receptor beta 1 like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables MHC class I protein binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
similar to cell surface receptor FDFACT
Names
paired immunoglobulin-like type 2 receptor beta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402317.1 → NP_001389246.1  similar to cell surface receptor FDFACT precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/TrEMBL
    A0A8I5ZPG3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    23438506..23445088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039090006.2 → XP_038945934.1  similar to cell surface receptor FDFACT isoform X1

    UniProtKB/TrEMBL
    M0R9M2
    Related
    ENSRNOP00000078791.2, ENSRNOT00000082889.3
    Conserved Domains (2) summary
    cd00096
    Location:39 → 49
    Ig; Ig strand B [structural motif]
    cl11960
    Location:29 → 141
    Ig; Immunoglobulin domain

RNA

  1. XR_010056384.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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