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Ssc4d scavenger receptor cysteine rich family member with 4 domains [ Rattus norvegicus (Norway rat) ]

Gene ID: 304401, updated on 2-Nov-2024

Summary

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Official Symbol
Ssc4dprovided by RGD
Official Full Name
scavenger receptor cysteine rich family member with 4 domainsprovided by RGD
Primary source
RGD:1306970
See related
EnsemblRapid:ENSRNOG00000001435 AllianceGenome:RGD:1306970
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Srcrb4d
Summary
Predicted to be located in membrane. Orthologous to human SSC4D (scavenger receptor cysteine rich family member with 4 domains). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 42.6), Adrenal (RPKM 30.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ssc4d in Genome Data Viewer
Location:
12q12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (26339576..26361317)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (20702931..20723732)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (23752823..23769466)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene deltex E3 ubiquitin ligase 2 Neighboring gene zona pellucida glycoprotein 3 Neighboring gene U6 spliceosomal RNA Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma Neighboring gene ribosomal protein S11, pseudogene 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
scavenger receptor cysteine-rich domain-containing group B protein
Names
scavenger receptor cysteine rich domain containing, group B (4 domains)
scavenger receptor cysteine rich family, 4 domains

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001431720.1 → NP_001418649.1  scavenger receptor cysteine-rich domain-containing group B protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/TrEMBL
    D3ZQH3

  2. NM_001431722.1 → NP_001418651.1  scavenger receptor cysteine-rich domain-containing group B protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/TrEMBL
    D3ZQH3

  3. NM_001431723.1 → NP_001418652.1  scavenger receptor cysteine-rich domain-containing group B protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  4. NM_001431724.1 → NP_001418653.1  scavenger receptor cysteine-rich domain-containing group B protein isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  5. NM_001431725.1 → NP_001418654.1  scavenger receptor cysteine-rich domain-containing group B protein isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  6. NM_001431726.1 → NP_001418655.1  scavenger receptor cysteine-rich domain-containing group B protein isoform 5

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  7. NM_001431727.1 → NP_001418656.1  scavenger receptor cysteine-rich domain-containing group B protein isoform 5

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  8. NM_001431728.1 → NP_001418657.1  scavenger receptor cysteine-rich domain-containing group B protein isoform 5

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    26339576..26361317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039090074.2 → XP_038946002.1  scavenger receptor cysteine-rich domain-containing group B protein isoform X5

    Conserved Domains (1) summary
    smart00202
    Location:200 → 299
    SR; Scavenger receptor Cys-rich

  2. XM_017598503.3 → XP_017453992.1  scavenger receptor cysteine-rich domain-containing group B protein isoform X2

    UniProtKB/TrEMBL
    A6J097
    Related
    ENSRNOP00000111627.1, ENSRNOT00000138849.1
    Conserved Domains (2) summary
    smart00202
    Location:200 → 299
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:205 → 300
    SRCR; Scavenger receptor cysteine-rich domain

  3. XM_039090072.2 → XP_038946000.1  scavenger receptor cysteine-rich domain-containing group B protein isoform X1

    Related
    ENSRNOP00000001953.6, ENSRNOT00000001953.8
    Conserved Domains (1) summary
    smart00202
    Location:200 → 299
    SR; Scavenger receptor Cys-rich

  4. XM_017598504.3 → XP_017453993.1  scavenger receptor cysteine-rich domain-containing group B protein isoform X3

    UniProtKB/TrEMBL
    A6J097

  5. XM_063271880.1 → XP_063127950.1  scavenger receptor cysteine-rich domain-containing group B protein isoform X4

  6. XM_017598501.3 → XP_017453990.1  scavenger receptor cysteine-rich domain-containing group B protein isoform X1

    Conserved Domains (1) summary
    smart00202
    Location:200 → 299
    SR; Scavenger receptor Cys-rich
Nucleotide Protein Strain
Heading Accession and Version

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