U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Mettl17 methyltransferase like 17 [ Rattus norvegicus (Norway rat) ]

Gene ID: 305845, updated on 2-Nov-2024

Summary

Official Symbol
Mettl17provided by RGD
Official Full Name
methyltransferase like 17provided by RGD
Primary source
RGD:1559895
See related
EnsemblRapid:ENSRNOG00000025512 AllianceGenome:RGD:1559895
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Mett11d1; RGD1559895
Summary
Predicted to enable 4 iron, 4 sulfur cluster binding activity; S-adenosyl-L-methionine binding activity; and mitochondrial ribosome binding activity. Predicted to be involved in mitochondrial small ribosomal subunit assembly. Predicted to be located in mitochondrial matrix and nucleoplasm. Orthologous to human METTL17 (methyltransferase like 17). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 56.8), Heart (RPKM 51.0) and 9 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Mettl17 in Genome Data Viewer
Location:
15p14
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (27055851..27062530)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (24582296..24589029)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (28287027..28293869)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene ribonuclease pseudogene Neighboring gene eosinophil-associated, ribonuclease A family, member 1 Neighboring gene solute carrier family 39 member 2 Neighboring gene NDRG family member 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding ISO
Inferred from Sequence Orthology
more info
 
enables S-adenosyl-L-methionine binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
NOT enables methyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables mitochondrial ribosome binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in mitochondrial small ribosomal subunit assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in ribosomal small subunit biogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in mitochondrial matrix ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
methyltransferase-like protein 17, mitochondrial
Names
methyltransferase 11 domain containing 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427254.1NP_001414183.1  methyltransferase-like protein 17, mitochondrial

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000015
    UniProtKB/TrEMBL
    D3Z930
    Related
    ENSRNOP00000062157.1, ENSRNOT00000064907.5

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    27055851..27062530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_005493934.2 RNA Sequence