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Rex1bd required for excision 1-B domain containing [ Rattus norvegicus (Norway rat) ]

Gene ID: 306348, updated on 2-Nov-2024

Summary

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Official Symbol
Rex1bdprovided by RGD
Official Full Name
required for excision 1-B domain containingprovided by RGD
Primary source
RGD:1566239
See related
EnsemblRapid:ENSRNOG00000019990 AllianceGenome:RGD:1566239
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1566239
Summary
Orthologous to human REX1BD (required for excision 1-B domain containing). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 84.4), Muscle (RPKM 84.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Rex1bd in Genome Data Viewer
Location:
16p14
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (18956023..18958494)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (18922050..18924521)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (20671935..20674846)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase 8 Neighboring gene KxDL motif containing 1 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 Neighboring gene cytokine receptor-like factor 1 Neighboring gene transmembrane protein 59-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
required for excision 1-B domain-containing protein
Names
uncharacterized protein C19orf60 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399434.1 → NP_001386363.1  required for excision 1-B domain-containing protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000016
    UniProtKB/TrEMBL
    A6KA44
    Related
    ENSRNOP00000091274.2, ENSRNOT00000095874.2
    Conserved Domains (1) summary
    pfam14966
    Location:32 → 126
    DNA_repr_REX1B; DNA repair REX1-B

  2. NM_001399435.1 → NP_001386364.1  required for excision 1-B domain-containing protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000016
    Related
    ENSRNOP00000060266.2, ENSRNOT00000063780.3
    Conserved Domains (1) summary
    pfam14966
    Location:12 → 86
    DNA_repr_REX1B; DNA repair REX1-B

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    18956023..18958494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001107305.1: Suppressed sequence

    Description
    NM_001107305.1: This RefSeq was removed because currently there is insufficient support for the transcript.
Nucleotide Protein Strain
Heading Accession and Version

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