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Hist1h2an histone cluster 1, H2an [ Rattus norvegicus (Norway rat) ]

Gene ID: 306970, updated on 2-Nov-2024

Summary

Official Symbol
Hist1h2anprovided by RGD
Official Full Name
histone cluster 1, H2anprovided by RGD
Primary source
RGD:1309078
See related
EnsemblRapid:ENSRNOG00000048264 AllianceGenome:RGD:1309078
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be a structural constituent of chromatin. Predicted to be involved in heterochromatin formation. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H2AC4 (H2A clustered histone 4) and H2AC8 (H2A clustered histone 8). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See Hist1h2an in Genome Data Viewer
Location:
17p11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (41961533..41963297)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (41534653..41535259)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (43779174..43779775)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene H3 clustered histone 13 Neighboring gene H2A clustered histone 23 Neighboring gene H2B clustered histone like 2 Neighboring gene uncharacterized LOC120097727 Neighboring gene H1.3 linker histone, cluster member

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of chromatin IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in heterochromatin formation IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of nucleosome IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
histone cluster 1, H2an
Names
histone 1, H2an

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107354.1NP_001100824.1  histone cluster 1, H2an

    See identical proteins and their annotated locations for NP_001100824.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474064
    UniProtKB/Swiss-Prot
    Q64598
    UniProtKB/TrEMBL
    A6KLN9, G3V9C0
    Related
    ENSRNOP00000101232.1, ENSRNOT00000134725.1
    Conserved Domains (1) summary
    PTZ00017
    Location:1130
    PTZ00017; histone H2A; Provisional

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    41961533..41963297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063276447.1XP_063132517.1  histone cluster 1, H2an isoform X1

    Related
    ENSRNOP00000109783.1, ENSRNOT00000158781.1