Zfp954 zinc finger protein 954 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Zfp954provided by RGD
Official Full Name: zinc finger protein 954provided by RGD
Primary source: RGD:1561308
See related: EnsemblRapid:ENSRNOG00000022742 AllianceGenome:RGD:1561308
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Zfp772
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF419 (zinc finger protein 419). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Brain (RPKM 76.7), Lung (RPKM 69.1) and 9 other tissues See more
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Genomic context

Location:: 1q12

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (75809401..75815348)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (66776279..66782224)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (69853553..69859391)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: zinc finger protein 419

Names: zinc finger protein 772

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001107472.1 → NP_001100942.1 zinc finger protein 419

See identical proteins and their annotated locations for NP_001100942.1

Status: PROVISIONAL

Source sequence(s)

CH474102

UniProtKB/TrEMBL

A6KS55, D4A7C1

Related

ENSRNOP00000047509.3, ENSRNOT00000042086.6

Conserved Domains (6) summary

smart00349
Location:42 → 95

KRAB; krueppel associated box

sd00017
Location:199 → 219

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:363 → 385

zf-C2H2; Zinc finger, C2H2 type

pfam01352
Location:42 → 81

KRAB; KRAB box

pfam13465
Location:240 → 264

zf-H2C2_2; Zinc-finger double domain

pfam15909
Location:336 → 409

zf-C2H2_8; C2H2-type zinc ribbon