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Zfp329 zinc finger protein 329 [ Rattus norvegicus (Norway rat) ]

Gene ID: 308361, updated on 2-Nov-2024

Summary

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Official Symbol
Zfp329provided by RGD
Official Full Name
zinc finger protein 329provided by RGD
Primary source
RGD:1565029
See related
EnsemblRapid:ENSRNOG00000019376 AllianceGenome:RGD:1565029
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565029
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF329 (zinc finger protein 329). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 56.7), Adrenal (RPKM 52.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zfp329 in Genome Data Viewer
Location:
1q21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (82469019..82570542, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (73403067..73498349, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (65781547..65800492)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 2 receptor, 36 Neighboring gene microRNA 295-2 Neighboring gene zinc finger and SCAN domain containing 18 Neighboring gene zinc finger protein 110 Neighboring gene zinc finger protein 8 Neighboring gene zinc finger and SCAN domain containing 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 329

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107477.2 → NP_001100947.1  zinc finger protein 329

    See identical proteins and their annotated locations for NP_001100947.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A6KQN2, D4AA65
    Related
    ENSRNOP00000106254.1, ENSRNOT00000154363.1
    Conserved Domains (3) summary
    COG5048
    Location:188 → 540
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:235 → 255
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:247 → 271
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    82469019..82570542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039111111.2 → XP_038967039.1  zinc finger protein 329 isoform X1

    Related
    ENSRNOP00000110039.1, ENSRNOT00000155263.1
    Conserved Domains (3) summary
    COG5048
    Location:221 → 476
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:240 → 260
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:477 → 501
    zf-H2C2_2; Zinc-finger double domain

  2. XM_006228109.5 → XP_006228171.1  zinc finger protein 329 isoform X2

    See identical proteins and their annotated locations for XP_006228171.1

    UniProtKB/TrEMBL
    A6KQN2, D4AA65
    Related
    ENSRNOP00000109760.1, ENSRNOT00000157145.1
    Conserved Domains (3) summary
    COG5048
    Location:188 → 540
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:235 → 255
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:247 → 271
    zf-H2C2_2; Zinc-finger double domain

  3. XM_006228110.5 → XP_006228172.1  zinc finger protein 329 isoform X2

    See identical proteins and their annotated locations for XP_006228172.1

    UniProtKB/TrEMBL
    A6KQN2, D4AA65
    Related
    ENSRNOP00000110254.1, ENSRNOT00000124916.1
    Conserved Domains (3) summary
    COG5048
    Location:188 → 540
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:235 → 255
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:247 → 271
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. XR_010051709.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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