U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Zfp575 zinc finger protein 575 [ Rattus norvegicus (Norway rat) ]

Gene ID: 308430, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
Zfp575provided by RGD
Official Full Name
zinc finger protein 575provided by RGD
Primary source
RGD:1305025
See related
EnsemblRapid:ENSRNOG00000024065 AllianceGenome:RGD:1305025
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Znf575
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF575 (zinc finger protein 575). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 2.1), Thymus (RPKM 1.4) and 6 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Zfp575 in Genome Data Viewer
Location:
1q21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (89302927..89305087, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (80175016..80177176, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (81447987..81450156, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene phospholipase A2 inhibitor and Ly6/Plaur domain containing Neighboring gene X-ray repair cross complementing 1 Neighboring gene ETHE1, persulfide dioxygenase Neighboring gene pleckstrin homology-like domain, family B, member 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger protein 575

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107489.1 → NP_001100959.1  zinc finger protein 575

    See identical proteins and their annotated locations for NP_001100959.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473979
    UniProtKB/TrEMBL
    A6J902, D4AB91
    Conserved Domains (1) summary
    sd00017
    Location:87 → 107
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    89302927..89305087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006228430.4 → XP_006228492.1  zinc finger protein 575 isoform X2

    See identical proteins and their annotated locations for XP_006228492.1

    UniProtKB/TrEMBL
    A6J902, D4AB91
    Conserved Domains (1) summary
    sd00017
    Location:87 → 107
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_039111360.1 → XP_038967288.1  zinc finger protein 575 isoform X1

    Conserved Domains (1) summary
    sd00017
    Location:96 → 116
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_039111359.2 → XP_038967287.1  zinc finger protein 575 isoform X1

    Related
    ENSRNOP00000038479.3, ENSRNOT00000035356.4
    Conserved Domains (1) summary
    sd00017
    Location:96 → 116
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools