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Txlnb taxilin beta [ Rattus norvegicus (Norway rat) ]

Gene ID: 308622, updated on 5-Mar-2024

Summary

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Official Symbol
Txlnbprovided by RGD
Official Full Name
taxilin betaprovided by RGD
Primary source
RGD:1307979
See related
Ensembl:ENSRNOG00000060021 AllianceGenome:RGD:1307979
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307979
Summary
Predicted to enable syntaxin binding activity. Predicted to be located in cytoplasm. Orthologous to human TXLNB (taxilin beta). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Muscle (RPKM 821.7) and Heart (RPKM 710.3) See more
Orthologs
human mouse all
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Genomic context

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See Txlnb in Genome Data Viewer
Location:
1p12
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (14224647..14269837)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (12404845..12449977)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (12915781..12961680)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134484952 Neighboring gene uncharacterized LOC134484954 Neighboring gene uncharacterized LOC134484953 Neighboring gene developmental pluripotency-associated protein 5A-like Neighboring gene heat shock protein 90 alpha family class A member 1, pseudogene 2 Neighboring gene hdc homolog, cell cycle regulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
beta-taxilin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135859.1 → NP_001129331.1  beta-taxilin

    See identical proteins and their annotated locations for NP_001129331.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473994
    UniProtKB/TrEMBL
    A0A0G2K2T1, A6JP90
    Related
    ENSRNOP00000072363.2, ENSRNOT00000089066.2
    Conserved Domains (1) summary
    pfam09728
    Location:147 → 459
    Taxilin; Myosin-like coiled-coil protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    14224647..14269837
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006227657.4 → XP_006227719.1  beta-taxilin isoform X1

    UniProtKB/TrEMBL
    A0A0G2K2T1
    Conserved Domains (2) summary
    PRK07764
    Location:527 → 677
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09728
    Location:146 → 453
    Taxilin; Myosin-like coiled-coil protein

  2. XM_039112431.2 → XP_038968359.1  beta-taxilin isoform X1

    Conserved Domains (2) summary
    PRK07764
    Location:527 → 677
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09728
    Location:146 → 453
    Taxilin; Myosin-like coiled-coil protein
Nucleotide Protein Strain
Heading Accession and Version

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