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Scgb1c1 secretoglobin, family 1C, member 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 309100, updated on 2-Nov-2024

Summary

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Official Symbol
Scgb1c1provided by RGD
Official Full Name
secretoglobin, family 1C, member 1provided by RGD
Primary source
RGD:1561432
See related
EnsemblRapid:ENSRNOG00000012847 AllianceGenome:RGD:1561432
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ryd5; RGD1561432
Summary
Predicted to be located in extracellular region. Orthologous to several human genes including SCGB1C1 (secretoglobin family 1C member 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 108.0), Uterus (RPKM 85.0) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Scgb1c1 in Genome Data Viewer
Location:
1q41
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (205352216..205354656)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (195922660..195925022)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (213595240..213596459)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene Sec61 translocon subunit gamma, pseudogene 3 Neighboring gene protein transport protein Sec61 subunit gamma-like Neighboring gene urate (5-hydroxyiso-) hydrolase Neighboring gene ciliary microtubule associated protein 1A Neighboring gene Bet1 golgi vesicular membrane trafficking protein-like Neighboring gene RIC8 guanine nucleotide exchange factor A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Novel genes for potential ligand-binding proteins in subregions of the olfactory mucosa. Dear TN, et al. EMBO J, 1991 Oct. PMID 1915264, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
secretoglobin family 1C member 1
Names
potential ligand-binding protein
secretoglobin RYD5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107561.1 → NP_001101031.1  secretoglobin family 1C member 1 precursor

    See identical proteins and their annotated locations for NP_001101031.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473953
    UniProtKB/Swiss-Prot
    Q05702
    UniProtKB/TrEMBL
    A6HXK7, G3V7P0
    Related
    ENSRNOP00000017137.5, ENSRNOT00000017137.7
    Conserved Domains (1) summary
    pfam01099
    Location:25 → 90
    Uteroglobin; Uteroglobin family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    205352216..205354656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039078911.2 → XP_038934839.1  secretoglobin family 1C member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A4Z2
    Conserved Domains (1) summary
    pfam01099
    Location:25 → 87
    Uteroglobin; Uteroglobin family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q05702.1 GenPept UniProtKB/Swiss-Prot:Q05702

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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