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Atxn7l2 ataxin 7-like 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 310781, updated on 2-Nov-2024

Summary

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Official Symbol
Atxn7l2provided by RGD
Official Full Name
ataxin 7-like 2provided by RGD
Primary source
RGD:1307047
See related
EnsemblRapid:ENSRNOG00000028749 AllianceGenome:RGD:1307047
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307047
Summary
Orthologous to human ATXN7L2 (ataxin 7 like 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 24.1), Adrenal (RPKM 21.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Atxn7l2 in Genome Data Viewer
Location:
2q34
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (198527066..198535899, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (195838920..195847339, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (210992904..211001287, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene adhesion molecule with Ig like domain 1 Neighboring gene cytochrome b561 family, member D1 Neighboring gene synaptophysin-like 2 Neighboring gene uncharacterized LOC134485671

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
ataxin-7-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001398744.1 → NP_001385673.1  ataxin-7-like protein 2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002
    UniProtKB/TrEMBL
    A6HUY7, F7FKK4
    Conserved Domains (2) summary
    COG5602
    Location:183 → 386
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
    pfam08313
    Location:261 → 321
    SCA7; zinc-binding domain

  2. NM_001398746.1 → NP_001385675.1  ataxin-7-like protein 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002
    Related
    ENSRNOP00000030245.8, ENSRNOT00000037336.7

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    198527066..198535899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063281920.1 → XP_063137990.1  ataxin-7-like protein 2 isoform X2

  2. XM_063281919.1 → XP_063137989.1  ataxin-7-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A6HUY7, F7FKK4

  3. XM_063281921.1 → XP_063137991.1  ataxin-7-like protein 2 isoform X3

  4. XM_063281922.1 → XP_063137992.1  ataxin-7-like protein 2 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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