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Arl14ep ADP-ribosylation factor like GTPase 14 effector protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 311279, updated on 2-Nov-2024

Summary

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Official Symbol
Arl14epprovided by RGD
Official Full Name
ADP-ribosylation factor like GTPase 14 effector proteinprovided by RGD
Primary source
RGD:1311463
See related
EnsemblRapid:ENSRNOG00000004891 AllianceGenome:RGD:1311463
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
ARF7EP; RGD1311463
Summary
Predicted to be located in several cellular components, including cytosol; focal adhesion; and nuclear lumen. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human ARL14EP (ADP ribosylation factor like GTPase 14 effector protein). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 108.1), Heart (RPKM 95.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Arl14ep in Genome Data Viewer
Location:
3q33
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (113896731..113908994, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (93441952..93454282, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (97981506..97993684, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene doublecortin domain containing 1, pseudogene 1 Neighboring gene doublecortin domain containing 1 Neighboring gene metallophosphoesterase domain containing 2 Neighboring gene histidine triad nucleotide binding protein 1, pseudogene 4 Neighboring gene uncharacterized LOC134486417 Neighboring gene follicle stimulating hormone subunit beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC109199

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
  
located_in focal adhesion ISO
Inferred from Sequence Orthology
more info
  
is_active_in intracellular membrane-bounded organelle IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
ARL14 effector protein
Names
ADP-ribosylation factor-like 14 effector protein
ARF7 effector protein
uncharacterized protein C11orf46 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014045.1 → NP_001014067.1  ARL14 effector protein

    See identical proteins and their annotated locations for NP_001014067.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089920
    UniProtKB/Swiss-Prot
    Q5FVK8
    UniProtKB/TrEMBL
    A6HNZ2
    Conserved Domains (1) summary
    pfam14949
    Location:145 → 248
    ARF7EP_C; ARF7 effector protein C-terminus

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    113896731..113908994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039104930.2 → XP_038960858.1  ARL14 effector protein isoform X1

    Related
    ENSRNOP00000006481.5, ENSRNOT00000006481.6
    Conserved Domains (1) summary
    pfam14949
    Location:145 → 248
    ARF7EP_C; ARF7 effector protein C-terminus

  2. XM_039104931.2 → XP_038960859.1  ARL14 effector protein isoform X1

    Conserved Domains (1) summary
    pfam14949
    Location:145 → 248
    ARF7EP_C; ARF7 effector protein C-terminus

  3. XM_063283707.1 → XP_063139777.1  ARL14 effector protein isoform X2

    UniProtKB/Swiss-Prot
    Q5FVK8
    UniProtKB/TrEMBL
    A6HNZ2

RNA

  1. XR_005501868.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5FVK8.1 GenPept UniProtKB/Swiss-Prot:Q5FVK8

Gene LinkOut

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