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Ccdc9b coiled-coil domain containing 9B [ Rattus norvegicus (Norway rat) ]

Gene ID: 311323, updated on 2-Nov-2024

Summary

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Official Symbol
Ccdc9bprovided by RGD
Official Full Name
coiled-coil domain containing 9Bprovided by RGD
Primary source
RGD:1565536
See related
EnsemblRapid:ENSRNOG00000028910 AllianceGenome:RGD:1565536
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565536
Summary
Orthologous to human CCDC9B (coiled-coil domain containing 9B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Heart (RPKM 262.3), Lung (RPKM 187.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ccdc9b in Genome Data Viewer
Location:
3q35
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (126190039..126198931, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (105736120..105745039, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (110548238..110557096, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102548045 Neighboring gene InaF motif containing 2 Neighboring gene proline, histidine and glycine rich 1 Neighboring gene dispatched RND transporter family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 9B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    126190039..126198931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056985389.2 → XP_056841369.1  coiled-coil domain-containing protein 9B isoform X5

  2. XM_063285305.1 → XP_063141375.1  coiled-coil domain-containing protein 9B isoform X3

  3. XM_056985387.2 → XP_056841367.1  coiled-coil domain-containing protein 9B isoform X1

    Related
    ENSRNOP00000070443.3, ENSRNOT00000092158.3

  4. XM_056985388.2 → XP_056841368.1  coiled-coil domain-containing protein 9B isoform X2

  5. XM_063285306.1 → XP_063141376.1  coiled-coil domain-containing protein 9B isoform X4

RNA

  1. XR_010065344.1 RNA Sequence

  2. XR_010065345.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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