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RGD1559747 similar to Zinc finger and SCAN domain containing protein 2 (Zinc finger protein 29) [ Rattus norvegicus (Norway rat) ]

Gene ID: 312310, updated on 17-Aug-2024

Summary

Symbol
RGD1559747provided by RGD
Full Name
similar to Zinc finger and SCAN domain containing protein 2 (Zinc finger protein 29)provided by RGD
Primary source
RGD:1559747
See related
EnsemblRapid:ENSRNOG00000070281 AllianceGenome:RGD:1559747
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 65.3), Brain (RPKM 39.9) and 8 other tissues See more
Orthologs
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Genomic context

See RGD1559747 in Genome Data Viewer
Location:
4q24
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (78906990..78916716)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (77579877..77585816)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (78263126..78269064)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene hypothetical LOC100363281 Neighboring gene replication initiator 1 Neighboring gene zinc finger protein 775 Neighboring gene GTPase, IMAP family member 8 Neighboring gene GTPase, IMAP family member 9

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
zinc finger protein LOC728743 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402001.1NP_001388930.1  zinc finger protein LOC728743 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A0A8I6G1L1, A6K0G6
    Related
    ENSRNOP00000092139.1, ENSRNOT00000104969.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    78906990..78916716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063286029.1XP_063142099.1  zinc finger protein LOC728743 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I6G1L1, A6K0G6

RNA

  1. XR_010065639.1 RNA Sequence

  2. XR_010065637.1 RNA Sequence

  3. XR_010065638.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001107860.1: Suppressed sequence

    Description
    NM_001107860.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.