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Avl9 AVL9 cell migration associated [ Rattus norvegicus (Norway rat) ]

Gene ID: 312371, updated on 2-Nov-2024

Summary

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Official Symbol
Avl9provided by RGD
Official Full Name
AVL9 cell migration associatedprovided by RGD
Primary source
RGD:1564615
See related
EnsemblRapid:ENSRNOG00000013314 AllianceGenome:RGD:1564615
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564615
Summary
Predicted to be involved in cell migration. Predicted to be located in recycling endosome. Predicted to be active in cytoplasm. Orthologous to human AVL9 (AVL9 cell migration associated). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 123.8), Brain (RPKM 117.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Avl9 in Genome Data Viewer
Location:
4q24
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (87291062..87338537)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (85961493..86008347)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (87026471..87070738)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL8-like Neighboring gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene kelch repeat and BTB domain containing 2 Neighboring gene FKBP prolyl isomerase 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Rab14 and its exchange factor FAM116 link endocytic recycling and adherens junction stability in migrating cells. Linford A, et al. Dev Cell, 2012 May 15. PMID 22595670, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in cell migration ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in recycling endosome ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
late secretory pathway protein AVL9 homolog
Names
AVL9 homolog (S. cerevisiase)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427284.1 → NP_001414213.1  late secretory pathway protein AVL9 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A0A8I5ZNY0, A6K115
    Related
    ENSRNOP00000079827.1, ENSRNOT00000120311.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    87291062..87338537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063286035.1 → XP_063142105.1  late secretory pathway protein AVL9 homolog isoform X1

    Related
    ENSRNOP00000102998.1, ENSRNOT00000128537.1

  2. XM_039108683.2 → XP_038964611.2  late secretory pathway protein AVL9 homolog isoform X2

  3. XM_063286036.1 → XP_063142106.1  late secretory pathway protein AVL9 homolog isoform X3

    Related
    ENSRNOP00000105284.1, ENSRNOT00000121441.1

RNA

  1. XR_005503610.2 RNA Sequence

  2. XR_010065640.1 RNA Sequence

  3. XR_010065641.1 RNA Sequence

  4. XR_005503608.2 RNA Sequence

  5. XR_010065642.1 RNA Sequence

  6. XR_010065643.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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