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Ubap2 ubiquitin-associated protein 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 313169, updated on 2-Nov-2024

Summary

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Official Symbol
Ubap2provided by RGD
Official Full Name
ubiquitin-associated protein 2provided by RGD
Primary source
RGD:1311717
See related
EnsemblRapid:ENSRNOG00000052087 AllianceGenome:RGD:1311717
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in cytoplasm. Orthologous to human UBAP2 (ubiquitin associated protein 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 57.4), Spleen (RPKM 40.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ubap2 in Genome Data Viewer
Location:
5q22
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (61144182..61233355, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (56348243..56437403, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (57534056..57632337, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene nucleolar protein 6 Neighboring gene uncharacterized LOC120103060 Neighboring gene ubiquitin-conjugating enzyme E2R 2 Neighboring gene small nucleolar RNA, C/D box 121B Neighboring gene small nucleolar RNA SNORD121A Neighboring gene small nucleolar RNA, C/D box 121A Neighboring gene ribosomal protein S13 like 1 Neighboring gene DDB1 and CUL4 associated factor 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. E-cadherin interactome complexity and robustness resolved by quantitative proteomics. Guo Z, et al. Sci Signal, 2014 Dec 2. PMID 25468996, Free PMC Article
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ubiquitin-associated protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107928.2 → NP_001101398.2  ubiquitin-associated protein 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A0A0U1RRQ3, A6IIU0
    Related
    ENSRNOP00000070607.2, ENSRNOT00000080295.3
    Conserved Domains (2) summary
    cd14277
    Location:53 → 90
    UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
    pfam12478
    Location:512 → 541
    DUF3697; Ubiquitin-associated protein 2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    61144182..61233355 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039109842.2 → XP_038965770.1  ubiquitin-associated protein 2 isoform X8

    UniProtKB/TrEMBL
    A0A0U1RRQ3, A6IIU0
    Conserved Domains (2) summary
    cd14277
    Location:53 → 90
    UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
    pfam12478
    Location:512 → 541
    DUF3697; Ubiquitin-associated protein 2

  2. XM_063287609.1 → XP_063143679.1  ubiquitin-associated protein 2 isoform X4

  3. XM_063287606.1 → XP_063143676.1  ubiquitin-associated protein 2 isoform X3

  4. XM_063287614.1 → XP_063143684.1  ubiquitin-associated protein 2 isoform X8

    UniProtKB/TrEMBL
    A0A0U1RRQ3

  5. XM_063287610.1 → XP_063143680.1  ubiquitin-associated protein 2 isoform X4

  6. XM_039109838.2 → XP_038965766.1  ubiquitin-associated protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A0G2JYI7, A6IIU0
    Related
    ENSRNOP00000075769.2, ENSRNOT00000092581.3
    Conserved Domains (2) summary
    cd14277
    Location:59 → 96
    UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
    pfam12478
    Location:518 → 547
    DUF3697; Ubiquitin-associated protein 2

  7. XM_063287605.1 → XP_063143675.1  ubiquitin-associated protein 2 isoform X3

  8. XM_063287611.1 → XP_063143681.1  ubiquitin-associated protein 2 isoform X4

  9. XM_063287615.1 → XP_063143685.1  ubiquitin-associated protein 2 isoform X9

  10. XM_063287613.1 → XP_063143683.1  ubiquitin-associated protein 2 isoform X8

    UniProtKB/TrEMBL
    A0A0U1RRQ3

  11. XM_063287608.1 → XP_063143678.1  ubiquitin-associated protein 2 isoform X4

  12. XM_063287607.1 → XP_063143677.1  ubiquitin-associated protein 2 isoform X3

  13. XM_017593356.3 → XP_017448845.1  ubiquitin-associated protein 2 isoform X11

    UniProtKB/TrEMBL
    A6IIU0
    Conserved Domains (2) summary
    cd14277
    Location:15 → 52
    UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
    pfam12478
    Location:474 → 503
    DUF3697; Ubiquitin-associated protein 2

  14. XM_063287616.1 → XP_063143686.1  ubiquitin-associated protein 2 isoform X10

  15. XM_063287604.1 → XP_063143674.1  ubiquitin-associated protein 2 isoform X2

  16. XM_063287603.1 → XP_063143673.1  ubiquitin-associated protein 2 isoform X1

  17. XM_006238054.4 → XP_006238116.2  ubiquitin-associated protein 2 isoform X6

  18. XM_063287612.1 → XP_063143682.1  ubiquitin-associated protein 2 isoform X5

    Related
    ENSRNOP00000070670.2, ENSRNOT00000080787.3
Nucleotide Protein Strain
Heading Accession and Version

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