C5h1orf216 similar to human chromosome 1 open reading frame 216 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: C5h1orf216provided by RGD
Official Full Name: similar to human chromosome 1 open reading frame 216provided by RGD
Primary source: RGD:1563072
See related: EnsemblRapid:ENSRNOG00000021609 AllianceGenome:RGD:1563072
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1563072
Expression: Biased expression in Brain (RPKM 109.1), Adrenal (RPKM 48.7) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 5q36

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	5	NC_086023.1 (144168240..144189761)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	5	NC_051340.1 (138900045..138905267)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	5	NC_005104.4 (144630291..144636569)

Chromosome 5 - NC_086023.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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General protein information

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Preferred Names: UPF0500 protein C1orf216 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001107981.3 → NP_001101451.1 UPF0500 protein C1orf216 homolog

See identical proteins and their annotated locations for NP_001101451.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000005

UniProtKB/TrEMBL

A6ISB1, D3ZVC1

Related

ENSRNOP00000101242.1, ENSRNOT00000139657.1

Conserved Domains (1) summary

pfam15546
Location:1 → 225

DUF4653; Domain of unknown function (DUF4653)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086023.1 Reference GRCr8

Range

144168240..144189761

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063287759.1 → XP_063143829.1 UPF0500 protein C1orf216 homolog isoform X2
XM_039110023.2 → XP_038965951.1 UPF0500 protein C1orf216 homolog isoform X1

Related

ENSRNOP00000032500.5, ENSRNOT00000029395.6

Conserved Domains (1) summary

pfam15546
Location:31 → 255

DUF4653; Domain of unknown function (DUF4653)