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Cfdp1l1 craniofacial development protein 1 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 313982, updated on 14-Nov-2024

Summary

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Official Symbol
Cfdp1l1provided by RGD
Official Full Name
craniofacial development protein 1 like 1provided by RGD
Primary source
RGD:1561890
See related
EnsemblRapid:ENSRNOG00000046279 AllianceGenome:RGD:1561890
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561890
Summary
Predicted to be located in kinetochore. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Cfdp1l1 in Genome Data Viewer
Location:
6q16
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (45983383..45984583)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (40254717..40255884)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (42777469..42778374)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene protein disulfide isomerase family A, member 6 Neighboring gene ATPase H+ transporting V1 subunit C2 Neighboring gene nucleolar protein 10 Neighboring gene proteasome activator subunit 3, pseudogene 2 Neighboring gene small nucleolar RNA, H/ACA box 80B Neighboring gene ornithine decarboxylase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in chromatin remodeling IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of Swr1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
craniofacial development protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    45983383..45984583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039078182.2 → XP_038934110.1  craniofacial development protein 1-like

    UniProtKB/TrEMBL
    A0A8I6ATB9
    Related
    ENSRNOT00000075437.4
    Conserved Domains (1) summary
    pfam07572
    Location:221 → 291
    BCNT; Bucentaur or craniofacial development
Nucleotide Protein Strain
Heading Accession and Version

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