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Snapc1 small nuclear RNA activating complex, polypeptide 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 314228, updated on 17-Aug-2024

Summary

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Official Symbol
Snapc1provided by RGD
Official Full Name
small nuclear RNA activating complex, polypeptide 1provided by RGD
Primary source
RGD:1304671
See related
EnsemblRapid:ENSRNOG00000009296 AllianceGenome:RGD:1304671
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC1 (small nuclear RNA activating complex polypeptide 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 89.5), Kidney (RPKM 70.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Snapc1 in Genome Data Viewer
Location:
6q24
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (98420588..98442065)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (92684785..92710772)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (96871675..96893422)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene protein kinase C, eta Neighboring gene large ribosomal subunit protein eL8-like Neighboring gene uncharacterized LOC120103553 Neighboring gene transmembrane protein 183A, pseudogene 2 Neighboring gene hypoxia inducible factor 1 subunit alpha Neighboring gene uncharacterized LOC134479220 Neighboring gene synaptotagmin 16 Neighboring gene uncharacterized LOC102550910

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. A structural perspective on RNA polymerase I and RNA polymerase III transcription machineries. Vannini A. Biochim Biophys Acta, 2013 Mar-Apr. PMID 23031840
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in snRNA transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in snRNA transcription by RNA polymerase III IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
part_of snRNA-activating protein complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
snRNA-activating protein complex subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108033.1 → NP_001101503.1  snRNA-activating protein complex subunit 1

    See identical proteins and their annotated locations for NP_001101503.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473947
    UniProtKB/TrEMBL
    B1WC17, F7ES94
    Related
    ENSRNOP00000107314.1, ENSRNOT00000136686.1
    Conserved Domains (1) summary
    pfam09808
    Location:26 → 210
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    98420588..98442065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039112268.2 → XP_038968196.1  snRNA-activating protein complex subunit 1 isoform X1

    UniProtKB/TrEMBL
    F7ES94
    Conserved Domains (1) summary
    pfam09808
    Location:1 → 146
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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