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Ccdc59 coiled-coil domain containing 59 [ Rattus norvegicus (Norway rat) ]

Gene ID: 314799, updated on 17-Aug-2024

Summary

Official Symbol
Ccdc59provided by RGD
Official Full Name
coiled-coil domain containing 59provided by RGD
Primary source
RGD:1311912
See related
EnsemblRapid:ENSRNOG00000004183 AllianceGenome:RGD:1311912
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311912
Summary
Orthologous to human CCDC59 (coiled-coil domain containing 59). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 43.0), Muscle (RPKM 40.2) and 9 other tissues See more
Orthologs
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Genomic context

Location:
7q21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (43029272..43035655)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (41142760..41149143)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (47928138..47934690)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene transmembrane O-mannosyltransferase targeting cadherins 2 Neighboring gene uncharacterized LOC120093578 Neighboring gene uncharacterized LOC134479681 Neighboring gene methyltransferase like 25 Neighboring gene uncharacterized LOC134479682 Neighboring gene PTPRF interacting protein alpha 2 Neighboring gene sulfotransferase 1C2 pseudogene Neighboring gene acyl-CoA synthetase short-chain family member 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
thyroid transcription factor 1-associated protein 26

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108090.1NP_001101560.1  thyroid transcription factor 1-associated protein 26

    See identical proteins and their annotated locations for NP_001101560.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473960
    UniProtKB/TrEMBL
    A6IGB7, D4ADF2
    Related
    ENSRNOP00000005740.4, ENSRNOT00000005740.8
    Conserved Domains (1) summary
    cl00489
    Location:164211
    60KD_IMP; 60Kd inner membrane protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    43029272..43035655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)