U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Dpy19l1 dpy-19 like C-mannosyltransferase 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 315496, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Dpy19l1provided by RGD
Official Full Name
dpy-19 like C-mannosyltransferase 1provided by RGD
Primary source
RGD:1305822
See related
EnsemblRapid:ENSRNOG00000026589 AllianceGenome:RGD:1305822
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1305822
Summary
Predicted to enable mannosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DPY19L1 (dpy-19 like C-mannosyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 181.0), Spleen (RPKM 139.8) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Dpy19l1 in Genome Data Viewer
Location:
8q13
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (31209025..31297485, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (22933163..23021461, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (25582938..25669394, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene S100 calcium binding protein A11, pseudogene 5 Neighboring gene neuropeptide S receptor 1 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene dpy-19 like 2 Neighboring gene T-box transcription factor 20

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Defining the membrane proteome of NK cells. Ghosh D, et al. J Mass Spectrom, 2010 Jan. PMID 19946888
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables mannosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
protein C-mannosyl-transferase DPY19L1
Names
dpy-19 like 1
dpy-19-like protein 1
probable C-mannosyltransferase DPY19L1
protein dpy-19 homolog 1
NP_001178720.1
XP_038937290.1
XP_038937291.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191791.2 → NP_001178720.1  protein C-mannosyl-transferase DPY19L1

    See identical proteins and their annotated locations for NP_001178720.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/Swiss-Prot
    D4AD75
    UniProtKB/TrEMBL
    A0A8I6G3Y6
    Related
    ENSRNOP00000033222.4, ENSRNOT00000036738.8
    Conserved Domains (1) summary
    pfam10034
    Location:105 → 743
    Dpy19; Q-cell neuroblast polarisation

  2. NM_001429803.1 → NP_001416732.1  protein C-mannosyl-transferase DPY19L1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/Swiss-Prot
    D4AD75

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    31209025..31297485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039081362.2 → XP_038937290.1  protein C-mannosyl-transferase DPY19L1 isoform X1

    Conserved Domains (1) summary
    pfam10034
    Location:105 → 743
    Dpy19; Q-cell neuroblast polarisation

  2. XM_039081363.2 → XP_038937291.1  protein C-mannosyl-transferase DPY19L1 isoform X2

    Conserved Domains (1) summary
    pfam10034
    Location:1 → 587
    Dpy19; Q-cell neuroblast polarisation
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
D4AD75.1 GenPept UniProtKB/Swiss-Prot:D4AD75

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools