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Ccdc33 coiled-coil domain containing 33 [ Rattus norvegicus (Norway rat) ]

Gene ID: 315712, updated on 2-Nov-2024

Summary

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Official Symbol
Ccdc33provided by RGD
Official Full Name
coiled-coil domain containing 33provided by RGD
Primary source
RGD:1561126
See related
EnsemblRapid:ENSRNOG00000008219 AllianceGenome:RGD:1561126
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be active in peroxisome. Orthologous to human CCDC33 (coiled-coil domain containing 33). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 16.4), Spleen (RPKM 7.7) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ccdc33 in Genome Data Viewer
Location:
8q24
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (67331519..67430194, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (58434798..58534338, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (62809768..62910520, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480058 Neighboring gene uncharacterized LOC103693105 Neighboring gene cytochrome P450, family 11, subfamily a, polypeptide 1 Neighboring gene uncharacterized LOC120094173 Neighboring gene signaling receptor and transporter of retinol STRA6 Neighboring gene immunoglobulin superfamily containing leucine-rich repeat

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Ccdc33, a predominantly testis-expressed gene, encodes a putative peroxisomal protein. Kaczmarek K, et al. Cytogenet Genome Res, 2009. PMID 20068295
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in peroxisome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in peroxisome ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 33

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014091.2 → NP_001014113.1  coiled-coil domain-containing protein 33 isoform 1

    See identical proteins and their annotated locations for NP_001014113.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/Swiss-Prot
    Q5XIR4
    UniProtKB/TrEMBL
    A0A8I5ZL14
    Related
    ENSRNOP00000055287.2, ENSRNOT00000058490.4
    Conserved Domains (1) summary
    cd00030
    Location:37 → 132
    C2; C2 domain

  2. NM_001413792.1 → NP_001400721.1  coiled-coil domain-containing protein 33 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    67331519..67430194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063265488.1 → XP_063121558.1  coiled-coil domain-containing protein 33 isoform X14

  2. XM_063265482.1 → XP_063121552.1  coiled-coil domain-containing protein 33 isoform X8

  3. XM_017595656.3 → XP_017451145.1  coiled-coil domain-containing protein 33 isoform X6

    UniProtKB/TrEMBL
    A0A8I5ZL14

  4. XM_039081473.2 → XP_038937401.1  coiled-coil domain-containing protein 33 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZL14
    Conserved Domains (2) summary
    cd00030
    Location:37 → 132
    C2; C2 domain
    TIGR02168
    Location:384 → 713
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_063265484.1 → XP_063121554.1  coiled-coil domain-containing protein 33 isoform X9

  6. XM_039081476.2 → XP_038937404.1  coiled-coil domain-containing protein 33 isoform X4

    UniProtKB/TrEMBL
    A0A8I5ZL14
    Conserved Domains (2) summary
    cd00030
    Location:37 → 132
    C2; C2 domain
    TIGR02168
    Location:384 → 701
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  7. XM_063265481.1 → XP_063121551.1  coiled-coil domain-containing protein 33 isoform X7

  8. XM_039081477.2 → XP_038937405.1  coiled-coil domain-containing protein 33 isoform X5

    UniProtKB/TrEMBL
    A0A8I5ZL14
    Conserved Domains (2) summary
    cd00030
    Location:37 → 132
    C2; C2 domain
    TIGR02168
    Location:384 → 662
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  9. XM_039081474.2 → XP_038937402.1  coiled-coil domain-containing protein 33 isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZL14
    Conserved Domains (2) summary
    cd00030
    Location:37 → 132
    C2; C2 domain
    TIGR02168
    Location:384 → 714
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  10. XM_039081478.2 → XP_038937406.1  coiled-coil domain-containing protein 33 isoform X10

    UniProtKB/TrEMBL
    A0A8I5ZL14
    Conserved Domains (1) summary
    TIGR02168
    Location:326 → 656
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  11. XM_063265485.1 → XP_063121555.1  coiled-coil domain-containing protein 33 isoform X11

  12. XM_063265486.1 → XP_063121556.1  coiled-coil domain-containing protein 33 isoform X12

  13. XM_063265487.1 → XP_063121557.1  coiled-coil domain-containing protein 33 isoform X13

  14. XM_039081475.2 → XP_038937403.1  coiled-coil domain-containing protein 33 isoform X3

    UniProtKB/TrEMBL
    A0A8I5ZL14
    Conserved Domains (2) summary
    cd00030
    Location:37 → 132
    C2; C2 domain
    TIGR02168
    Location:384 → 705
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RNA

  1. XR_005487820.2 RNA Sequence

  2. XR_005487821.2 RNA Sequence

  3. XR_005487819.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5XIR4.1 GenPept UniProtKB/Swiss-Prot:Q5XIR4

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