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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001372159.2 → NP_001359088.1 immunoglobulin superfamily DCC subclass member 3 isoform 1 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
JAXUCZ010000008
- UniProtKB/TrEMBL
- A6J5E1, D3ZQ86
- Related
- ENSRNOP00000039295.3, ENSRNOT00000051353.6
- Conserved Domains (5) summary
-
- smart00410
Location:254 → 336
- IG_like; Immunoglobulin like
- cd00063
Location:434 → 527
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:554 → 613
- fn3; Fibronectin type III domain
- pfam07679
Location:341 → 427
- I-set; Immunoglobulin I-set domain
- cl11960
Location:54 → 145
- Ig; Immunoglobulin domain
-
NM_001372161.2 → NP_001359090.1 immunoglobulin superfamily DCC subclass member 3 isoform 2 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
JAXUCZ010000008
- UniProtKB/TrEMBL
-
A6J5E1
- Conserved Domains (5) summary
-
- smart00410
Location:254 → 336
- IG_like; Immunoglobulin like
- cd00063
Location:434 → 527
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:554 → 613
- fn3; Fibronectin type III domain
- pfam07679
Location:341 → 427
- I-set; Immunoglobulin I-set domain
- cl11960
Location:54 → 145
- Ig; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCr8
Genomic
-
NC_086026.1 Reference GRCr8
- Range
-
74556348..74603136
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001108160.1: Suppressed sequence
- Description
- NM_001108160.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: IGDCC3 (GeneID:9543).