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Cnppd1 cyclin Pas1/PHO80 domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 316530, updated on 2-Nov-2024

Summary

Official Symbol
Cnppd1provided by RGD
Official Full Name
cyclin Pas1/PHO80 domain containing 1provided by RGD
Primary source
RGD:735175
See related
EnsemblRapid:ENSRNOG00000018325 AllianceGenome:RGD:735175
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD735175
Summary
Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be located in membrane. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in nucleus. Orthologous to human CNPPD1 (cyclin Pas1/PHO80 domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Spleen (RPKM 250.8), Thymus (RPKM 236.6) and 9 other tissues See more
Orthologs
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Genomic context

See Cnppd1 in Genome Data Viewer
Location:
9q33
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (84082148..84088888, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (76633475..76640164, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (82338865..82345262, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene nonhomologous end-joining factor 1 Neighboring gene ATP synthase membrane subunit c locus 2 like 1 Neighboring gene solute carrier family 23, member 3 Neighboring gene reticulophagy regulator family member 2 Neighboring gene zinc finger AN1-type containing 2B

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Clone Names

  • MGC72616

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of cyclin-dependent protein kinase holoenzyme complex IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
protein CNPPD1
Names
hypothetical protein MGC:72616

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199112.1NP_954543.1  protein CNPPD1

    See identical proteins and their annotated locations for NP_954543.1

    Status: PROVISIONAL

    Source sequence(s)
    BC061750
    UniProtKB/Swiss-Prot
    Q6P7B2
    UniProtKB/TrEMBL
    A0A8I6GHZ2, A6JVX6
    Related
    ENSRNOP00000024975.3, ENSRNOT00000024975.6
    Conserved Domains (1) summary
    cd20557
    Location:79172
    CYCLIN_ScPCL1-like; cyclin box found in Saccharomyces cerevisiae G1/S-specific cyclin PCL1, PCL2 and similar proteins

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    84082148..84088888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006245226.5XP_006245288.1  protein CNPPD1 isoform X1

    See identical proteins and their annotated locations for XP_006245288.1

    UniProtKB/Swiss-Prot
    Q6P7B2
    UniProtKB/TrEMBL
    A0A8I6GHZ2, A6JVX6
    Conserved Domains (1) summary
    cd20557
    Location:79172
    CYCLIN_ScPCL1-like; cyclin box found in Saccharomyces cerevisiae G1/S-specific cyclin PCL1, PCL2 and similar proteins