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Iqca1 IQ motif containing with AAA domain 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 316616, updated on 1-Aug-2024

Summary

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Symbol
Iqca1provided by RGD
Full Name
IQ motif containing with AAA domain 1provided by RGD
Primary source
RGD:1305311
See related
EnsemblRapid:ENSRNOG00000019592 AllianceGenome:RGD:1305311
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Iqca; RGD1305311
Summary
Orthologous to human IQCA1 (IQ motif containing with AAA domain 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 33.3), Lung (RPKM 16.9) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Iqca1 in Genome Data Viewer
Location:
9q36
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (98074389..98190233, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (90626735..90742563, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (97190240..97298760, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene gastrulation brain homeobox 2 Neighboring gene ankyrin repeat and SOCS box-containing 18 Neighboring gene uncharacterized LOC102554789 Neighboring gene uncharacterized LOC134480407 Neighboring gene uncharacterized LOC134480408 Neighboring gene atypical chemokine receptor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
IQ motif containing with AAA domain 1; dynein regulatory complex protein 11
Names
IQ and AAA domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001431271.1 → NP_001418200.1  IQ motif containing with AAA domain 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    F1LX47, F1M7Z2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    98074389..98190233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017596905.3 → XP_017452394.2  dynein regulatory complex protein 11 isoform X1

    Related
    ENSRNOP00000053565.6, ENSRNOT00000056724.7
    Conserved Domains (2) summary
    TIGR01243
    Location:420 → 758
    CDC48; AAA family ATPase, CDC48 subfamily
    cl38936
    Location:549 → 708
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_039084725.2 → XP_038940653.1  dynein regulatory complex protein 11 isoform X2

    Conserved Domains (2) summary
    TIGR01243
    Location:420 → 618
    CDC48; AAA family ATPase, CDC48 subfamily
    cl38936
    Location:549 → 629
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein Strain
Heading Accession and Version

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