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Mageb16 MAGE family member B16 [ Rattus norvegicus (Norway rat) ]

Gene ID: 317274, updated on 2-Nov-2024

Summary

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Official Symbol
Mageb16provided by RGD
Official Full Name
MAGE family member B16provided by RGD
Primary source
RGD:1562365
See related
EnsemblRapid:ENSRNOG00000029408 AllianceGenome:RGD:1562365
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Snca
Summary
Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human MAGEB16 (MAGE family member B16). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 38.7) See more
Orthologs
human mouse all
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Genomic context

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See Mageb16 in Genome Data Viewer
Location:
Xq21
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (47580752..47665173, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (43693205..43725664, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (46977655..47026377, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2L 3, pseudogene 2 Neighboring gene cilia and flagella associated protein 47 Neighboring gene transfer RNA serine (anticodon AGA) 25 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene serine and arginine rich splicing factor 10, pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
melanoma-associated antigen B16
Names
MAGE-B16 antigen
melanoma antigen family B, 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025013.1 → NP_001020184.1  melanoma-associated antigen B16

    See identical proteins and their annotated locations for NP_001020184.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079208
    UniProtKB/Swiss-Prot
    Q6AY37
    UniProtKB/TrEMBL
    M0R5A2
    Related
    ENSRNOP00000097562.1, ENSRNOT00000116863.2
    Conserved Domains (2) summary
    pfam01454
    Location:150 → 300
    MAGE; MAGE family
    pfam12440
    Location:3 → 99
    MAGE_N; Melanoma associated antigen family N terminal

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    47580752..47665173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063280034.1 → XP_063136104.1  melanoma-associated antigen B16 isoform X1

    UniProtKB/Swiss-Prot
    Q6AY37
    Related
    ENSRNOP00000103351.1, ENSRNOT00000161603.1

  2. XM_063280035.1 → XP_063136105.1  melanoma-associated antigen B16 isoform X1

    UniProtKB/Swiss-Prot
    Q6AY37
    Related
    ENSRNOP00000064565.2, ENSRNOT00000042568.6

  3. XM_063280033.1 → XP_063136103.1  melanoma-associated antigen B16 isoform X1

    UniProtKB/Swiss-Prot
    Q6AY37

  4. XM_006256977.5 → XP_006257039.2  melanoma-associated antigen B16 isoform X1

    UniProtKB/Swiss-Prot
    Q6AY37
    UniProtKB/TrEMBL
    M0R5A2
    Related
    ENSRNOP00000110263.1, ENSRNOT00000168719.1
    Conserved Domains (2) summary
    pfam01454
    Location:150 → 300
    MAGE; MAGE family
    pfam12440
    Location:3 → 99
    MAGE_N; Melanoma associated antigen family N terminal
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6AY37.1 GenPept UniProtKB/Swiss-Prot:Q6AY37

Gene LinkOut

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