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Itih6 inter-alpha-trypsin inhibitor heavy chain family member 6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 317416, updated on 18-Sep-2024

Summary

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Official Symbol
Itih6provided by RGD
Official Full Name
inter-alpha-trypsin inhibitor heavy chain family member 6provided by RGD
Primary source
RGD:1595851
See related
EnsemblRapid:ENSRNOG00000069211 AllianceGenome:RGD:1595851
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Itih6-ps1
Expression
Biased expression in Muscle (RPKM 5.9), Adrenal (RPKM 1.1) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Itih6 in Genome Data Viewer
Location:
Xq12
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (23180659..23217716)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (19753322..19790381)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (33156706..33169849, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA11 Neighboring gene ras homolog family member A, pseudogene 1 Neighboring gene MAGE family member D2 Neighboring gene large ribosomal subunit protein eL21-like Neighboring gene oligosaccharyltransferase complex non-catalytic subunit, pseudogene 1 Neighboring gene aminoacylase 1 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in hyaluronan metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
inter-alpha-trypsin inhibitor heavy chain H6
Names
inter-alpha-trypsin inhibitor heavy chain H6-like
inter-alpha-trypsin inhibitor heavy chain family member 6, pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402475.1 → NP_001389404.1  inter-alpha-trypsin inhibitor heavy chain H6 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000021
    Related
    ENSRNOP00000084207.2, ENSRNOT00000114911.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    23180659..23217716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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