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D130020L05Rik RIKEN cDNA D130020L05 gene [ Mus musculus (house mouse) ]

Gene ID: 319760, updated on 17-Aug-2024

Summary

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Official Symbol
D130020L05Rikprovided by MGI
Official Full Name
RIKEN cDNA D130020L05 geneprovided by MGI
Primary source
MGI:MGI:2450270
See related
Ensembl:ENSMUSG00000097121 AllianceGenome:MGI:2450270
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9430007L23Rik
Expression
Ubiquitous expression in testis adult (RPKM 20.2), adrenal adult (RPKM 10.6) and 27 other tissues See more
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Genomic context

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See D130020L05Rik in Genome Data Viewer
Location:
12 E; 12 51.19 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (101048710..101055186)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (101082451..101088927)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 88C Neighboring gene STARR-positive B cell enhancer ABC_E8502 Neighboring gene microRNA 1190 Neighboring gene protein phosphatase 4 regulatory subunit 3A Neighboring gene predicted gene, 47639 Neighboring gene STARR-seq mESC enhancer starr_33083 Neighboring gene STARR-seq mESC enhancer starr_33084 Neighboring gene myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 2 Neighboring gene kinesin family member 4, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mutagenesis of diploid mammalian genes by gene entrapment. Lin Q, et al. Nucleic Acids Res, 2006. PMID 17062627, Free PMC Article
  2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038047.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longest transcript.
    Source sequence(s)
    AK047073, AK087910, BU939156

  2. NR_038048.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, as compared to variant 1.
    Source sequence(s)
    AK047073, AK087910, BU939156

  3. NR_038049.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two internal exons, as compared to variant 1.
    Source sequence(s)
    AK047073, AK087910, BX512124
    Related
    ENSMUST00000180800.2

  4. NR_038050.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has an additional segment in the 5' region and lacks an exon in the 3' region, as compared to variant 1.
    Source sequence(s)
    AC131759

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    101048710..101055186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_176997.2: Suppressed sequence

    Description
    NM_176997.2: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

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